millironx/XAM.jl
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10 commits

Author SHA1 Message Date
Ciarán O'Mara
6bc08e15b2 Add tests for issue #31 
Test for expected results as described in https://github.com/BioJulia/XAM.jl/issues/31.

This commit needs redoing once https://github.com/BioJulia/FormatSpecimens.jl/pull/5 is released upstream.
 2021-10-24 01:25:02 +11:00
Ciarán O’Mara
c423694f29 Cater for blank sam files 2021-04-01 12:37:35 +11:00
Ciarán O'Mara
0ac352f1d2 Isolate testsets 2020-06-20 23:31:45 +10:00
Ciarán O'Mara
5fa8c5bd2e Tests for in-place-reading pattern 2020-04-17 15:51:11 +10:00
Ciarán O'Mara
f6846edfb1 Check header in roundtrip 2020-03-21 17:16:14 +11:00
Ciarán O'Mara
c4f3c4b0df Migrate to BioGenerics 
Basic find and replace.
 2020-03-13 23:01:25 +11:00
herbstk
6a33ac06a7 ✅ Enhanced unit test for rightposition (#37) 
Added additional tests for SAM.Record and BAM.Record for `rightposition` (and implicitly `alignlength`).
 2020-03-13 20:41:06 +11:00
Ciarán O'Mara
2df146b8fc Use FormatSpecimens 2020-02-26 10:28:39 +11:00
Ciarán O'Mara
1a3c986152 Minimal code adjustments for working separation 
- Update to use GenomicFeatures v2.
- BioAlignments v2.
- BioSequences v2.
- Indexes v0.1.
 2020-02-20 21:19:07 +11:00
Ciarán O'Mara
7a56931b90 Naive code roundup 2020-02-20 10:19:28 +11:00