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Add tests for issue #31

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Test for expected results as described in https://github.com/BioJulia/XAM.jl/issues/31.

This commit needs redoing once https://github.com/BioJulia/FormatSpecimens.jl/pull/5 is released upstream.
This commit is contained in:
Ciarán O'Mara 2021-10-24 01:22:00 +11:00
parent 22667dc7af
commit 6bc08e15b2
4 changed files with 13 additions and 0 deletions
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test/data/SRR7993829_1.100K.forward.bam Normal file
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test/data/SRR7993829_1.100K.forward.bam.bai Normal file
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test/runtests.jl
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@ -25,3 +25,4 @@ end
include("test_sam.jl")
include("test_bam.jl")
include("test_issues.jl")

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test/test_issues.jl Normal file
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@testset "Issues" begin
# https://github.com/BioJulia/XAM.jl/issues/31
path_bam = joinpath(@__DIR__, "data", "SRR7993829_1.100K.forward.bam")
open(BAM.Reader, path_bam, index = path_bam * ".bai") do reader
@test count((r)-> true, eachoverlap(reader, "JH584304.1", 51000:51200)) == 0
@test count((r)-> true, eachoverlap(reader, "JH584304.1", 51000:51715)) == 1
end
end