23 commits

Author	SHA1	Message	Date
Ciarán O'Mara	429f69d84b	Merge branch 'master' into develop	2020-03-21 17:28:02 +11:00
Ciarán O'Mara	d0e2560ec4	Correct header parsing	2020-03-21 17:18:39 +11:00
Ciarán O'Mara	e69c6de586	Equality comparators	2020-03-21 17:18:34 +11:00
Ciarán O'Mara	cc2af1976b	Use broadcast	2020-03-21 12:52:50 +11:00
Ciarán O'Mara	08e253c297	Use collect	2020-03-21 12:52:45 +11:00
Ciarán O'Mara	de56faf066	Migrate from BufferedStreams to TranscodingStreams	2020-03-13 23:01:25 +11:00
Ciarán O'Mara	12db2c4ea8	Align emission symbols for TranscodingStreams	2020-03-13 23:01:25 +11:00
Ciarán O'Mara	6cd89aba08	Move isinteractive into machine	2020-03-13 23:01:25 +11:00
Ciarán O'Mara	892ad0d7dc	Pipe into eval	2020-03-13 23:01:25 +11:00
Ciarán O'Mara	e63ce2e398	Group Automa into readrecord.jl	2020-03-13 23:01:25 +11:00
Ciarán O'Mara	365f7922fa	Quick fix for BioGenerics.ReaderHelper functions ... This fix is likely to be replaced when migrating to TranscodingStreams.	2020-03-13 23:01:25 +11:00
Ciarán O'Mara	c59a157675	Quick fix for BioCore.Ragel.State ... This fix is likely to be replaced when migrating to TranscodingStreams.	2020-03-13 23:01:25 +11:00
Ciarán O'Mara	2cad552f63	Quick fix for BioCore.RecordHelper: unsafe_parse_decimal	2020-03-13 23:01:25 +11:00
Ciarán O'Mara	c4f3c4b0df	Migrate to BioGenerics ... Basic find and replace.	2020-03-13 23:01:25 +11:00
Ciarán O'Mara	e8ad60b086	Use accessor functions	2020-03-13 22:58:34 +11:00
Ciarán O'Mara	b0069d6f27	Preallocate	2020-03-13 22:58:34 +11:00
Ciarán O'Mara	789cccbaff	Flatten elseif	2020-03-13 22:58:34 +11:00
Ciarán O'Mara	ef99c70317	Flatten returns	2020-03-13 22:58:34 +11:00
Ciarán O'Mara	f272b41031	Flatten	2020-03-13 22:09:28 +11:00
Konrad Herbst	8d14563f9d	🐛 Fix SAM.alignlength(record::Record)::Int (#37) ... Fixes issue #37 by re-initializing `len` in `SAM.alignlength`.	2020-03-13 20:41:06 +11:00
Ciarán O'Mara	1a3c986152	Minimal code adjustments for working separation ... - Update to use GenomicFeatures v2. - BioAlignments v2. - BioSequences v2. - Indexes v0.1.	2020-02-20 21:19:07 +11:00
Ciarán O'Mara	7a56931b90	Naive code roundup	2020-02-20 10:19:28 +11:00
Ciarán O'Mara	07c0f925e6	Generated files	2020-01-17 16:34:47 +11:00