17 commits

Author	SHA1	Message	Date
Jonathan Bieler	93a6b60d26	added method for handling different bam index types	2022-10-13 15:06:39 +02:00
Ciarán O'Mara	8424757cc2	Merge branch 'master' into develop ... # Conflicts: # Project.toml # test/runtests.jl	2022-08-15 15:34:24 +10:00
Ciarán O'Mara	99aa013c2b	Add tests for issue #31 ... Test for expected results as described in https://github.com/BioJulia/XAM.jl/issues/31.	2022-08-15 12:30:27 +10:00
Ciarán O’Mara	8f26bbf4a7	Tidy state machines and improve error messages ... Makes better use of the existing flow in [Automa.jl](b6997f7415/src/Stream.jl (L124-L127)).	2021-06-29 13:25:30 +10:00
Ciarán O’Mara	c56eb0851a	Update Continuous Integration workflows ... - Includes doctest in tests.	2021-06-29 13:23:00 +10:00
Ciarán O’Mara	5bd793bc5f	Merge branch 'master' into develop	2021-04-01 12:37:54 +11:00
Ciarán O’Mara	c423694f29	Cater for blank sam files	2021-04-01 12:37:35 +11:00
Jakob Nissen	b086fefbd5	Make BAM record layout match BAM specs	2020-10-20 01:52:31 +11:00
Ciarán O'Mara	433b8d14e8	Begin crosschecks	2020-08-13 16:45:51 +10:00
Ciarán O'Mara	0ac352f1d2	Isolate testsets	2020-06-20 23:31:45 +10:00
Ciarán O'Mara	5fa8c5bd2e	Tests for in-place-reading pattern	2020-04-17 15:51:11 +10:00
Ciarán O'Mara	f6846edfb1	Check header in roundtrip	2020-03-21 17:16:14 +11:00
Ciarán O'Mara	c4f3c4b0df	Migrate to BioGenerics ... Basic find and replace.	2020-03-13 23:01:25 +11:00
herbstk	6a33ac06a7	✅ Enhanced unit test for rightposition (#37) ... Added additional tests for SAM.Record and BAM.Record for `rightposition` (and implicitly `alignlength`).	2020-03-13 20:41:06 +11:00
Ciarán O'Mara	2df146b8fc	Use FormatSpecimens	2020-02-26 10:28:39 +11:00
Ciarán O'Mara	1a3c986152	Minimal code adjustments for working separation ... - Update to use GenomicFeatures v2. - BioAlignments v2. - BioSequences v2. - Indexes v0.1.	2020-02-20 21:19:07 +11:00
Ciarán O'Mara	7a56931b90	Naive code roundup	2020-02-20 10:19:28 +11:00