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6bc08e15b2
Test for expected results as described in https://github.com/BioJulia/XAM.jl/issues/31. This commit needs redoing once https://github.com/BioJulia/FormatSpecimens.jl/pull/5 is released upstream.
12 lines
398 B
Julia
12 lines
398 B
Julia
@testset "Issues" begin
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# https://github.com/BioJulia/XAM.jl/issues/31
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path_bam = joinpath(@__DIR__, "data", "SRR7993829_1.100K.forward.bam")
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open(BAM.Reader, path_bam, index = path_bam * ".bai") do reader
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@test count((r)-> true, eachoverlap(reader, "JH584304.1", 51000:51200)) == 0
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@test count((r)-> true, eachoverlap(reader, "JH584304.1", 51000:51715)) == 1
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end
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end
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