mirror of
https://github.com/MillironX/docker-BioJulia.git
synced 2024-11-21 14:36:03 +00:00
[⚡ AUTOMATED]: Pkg upgrade for 2023-04-16
Files changed:\nM Manifest.toml
This commit is contained in:
MillironX
parent
2dee1f34c9
commit
293bff140a
1 changed files with 53 additions and 53 deletions
106
Manifest.toml
106
Manifest.toml
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@ -277,9 +277,9 @@ version = "0.14.4"
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[[CodeTracking]]
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deps = ["InteractiveUtils", "UUIDs"]
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git-tree-sha1 = "0683f086e2ef8e2fdacd3f246b35c59e7088b283"
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git-tree-sha1 = "d730914ef30a06732bdd9f763f6cc32e92ffbff1"
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uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2"
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version = "1.3.0"
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version = "1.3.1"
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[[CodecBase]]
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deps = ["TranscodingStreams"]
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@ -486,9 +486,9 @@ version = "0.4.0"
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[[DiffEqBase]]
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deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"]
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git-tree-sha1 = "15a24aa2414fad34136724c4a16e556f264ddd11"
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git-tree-sha1 = "988bbd7283aaee5c34cd3cc09e78e7c45a931c5b"
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uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
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version = "6.122.1"
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version = "6.123.0"
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[[DiffEqCallbacks]]
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deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
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@ -538,9 +538,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
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[[Distributions]]
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deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"]
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git-tree-sha1 = "da9e1a9058f8d3eec3a8c9fe4faacfb89180066b"
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git-tree-sha1 = "13027f188d26206b9e7b863036f87d2f2e7d013a"
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uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
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version = "0.25.86"
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version = "0.25.87"
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[[DocStringExtensions]]
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deps = ["LibGit2"]
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@ -753,15 +753,15 @@ version = "0.1.4"
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[[GR]]
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deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"]
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git-tree-sha1 = "4423d87dc2d3201f3f1768a29e807ddc8cc867ef"
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git-tree-sha1 = "0635807d28a496bb60bc15f465da0107fb29649c"
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uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
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version = "0.71.8"
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version = "0.72.0"
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[[GR_jll]]
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deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt5Base_jll", "Zlib_jll", "libpng_jll"]
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git-tree-sha1 = "3657eb348d44575cc5560c80d7e55b812ff6ffe1"
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git-tree-sha1 = "99e248f643b052a77d2766fe1a16fb32b661afd4"
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uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
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version = "0.71.8+0"
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version = "0.72.0+0"
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[[GenericSchur]]
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deps = ["LinearAlgebra", "Printf"]
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@ -860,9 +860,9 @@ version = "0.1.14"
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[[HypergeometricFunctions]]
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deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
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git-tree-sha1 = "d926e9c297ef4607866e8ef5df41cde1a642917f"
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git-tree-sha1 = "432b5b03176f8182bd6841fbfc42c718506a2d5f"
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uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
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version = "0.3.14"
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version = "0.3.15"
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[[HypothesisTests]]
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deps = ["Combinatorics", "Distributions", "LinearAlgebra", "Random", "Rmath", "Roots", "Statistics", "StatsBase"]
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@ -1125,9 +1125,9 @@ version = "0.5.4"
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[[JSON]]
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deps = ["Dates", "Mmap", "Parsers", "Unicode"]
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git-tree-sha1 = "3c837543ddb02250ef42f4738347454f95079d4e"
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git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a"
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uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
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version = "0.21.3"
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version = "0.21.4"
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[[JSON3]]
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deps = ["Dates", "Mmap", "Parsers", "SnoopPrecompile", "StructTypes", "UUIDs"]
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@ -1372,9 +1372,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
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[[LinearSolve]]
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deps = ["ArrayInterface", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SnoopPrecompile", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
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git-tree-sha1 = "1d3e720d603557d697fedc036bd1af43fe7b3474"
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git-tree-sha1 = "4a4f8cc7a59fadbb02d1852d1e0cef5dca3a9460"
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uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
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version = "1.41.1"
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version = "1.42.0"
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[[LittleCMS_jll]]
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deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg"]
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@ -1393,9 +1393,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
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[[LoopVectorization]]
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deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDTypes", "SLEEFPirates", "SnoopPrecompile", "SpecialFunctions", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"]
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git-tree-sha1 = "a282dbdbc2860134d6809acd951543ce359bcf15"
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git-tree-sha1 = "defbfba8ddbccdc8ca3edb4a96a6d6fd3cd33ebd"
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uuid = "bdcacae8-1622-11e9-2a5c-532679323890"
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version = "0.12.155"
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version = "0.12.157"
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[[Lz4_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
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@ -1411,9 +1411,9 @@ version = "2022.2.0+0"
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[[MLBase]]
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deps = ["IterTools", "Random", "Reexport", "StatsBase"]
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git-tree-sha1 = "3bd9fd4baf19dfc1edf344bc578da7f565da2e18"
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git-tree-sha1 = "a0242608e72ba745d43ec385b2e95a562633f8fc"
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uuid = "f0e99cf1-93fa-52ec-9ecc-5026115318e0"
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version = "0.9.0"
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version = "0.9.1"
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[[MMTF]]
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deps = ["CodecZlib", "Downloads", "MsgPack"]
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@ -1455,9 +1455,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
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[[MathOptInterface]]
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deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "Printf", "SnoopPrecompile", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
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git-tree-sha1 = "3ba708c18f4a5ee83f3a6fb67a2775147a1f59f5"
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git-tree-sha1 = "58a367388e1b068104fa421cb34f0e6ee6316a26"
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uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
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version = "1.13.2"
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version = "1.14.1"
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[[MathProgBase]]
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deps = ["LinearAlgebra", "SparseArrays"]
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@ -1576,9 +1576,9 @@ version = "1.0.2"
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[[NamedArrays]]
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deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"]
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git-tree-sha1 = "2b3bcadd0fc35debfd67972e1af45a3a761f2d4b"
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git-tree-sha1 = "b84e17976a40cb2bfe3ae7edb3673a8c630d4f95"
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uuid = "86f7a689-2022-50b4-a561-43c23ac3c673"
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version = "0.9.7"
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version = "0.9.8"
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[[NearestNeighbors]]
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deps = ["Distances", "StaticArrays"]
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@ -1631,16 +1631,16 @@ uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051"
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version = "1.3.5+1"
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[[OnlineStats]]
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deps = ["AbstractTrees", "Dates", "LinearAlgebra", "OnlineStatsBase", "OrderedCollections", "Random", "RecipesBase", "Statistics", "StatsBase"]
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git-tree-sha1 = "e81f7f4179becdb6c365fb5a44042cfe7d50b77a"
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deps = ["AbstractTrees", "Dates", "Distributions", "LinearAlgebra", "OnlineStatsBase", "OrderedCollections", "Random", "RecipesBase", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"]
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git-tree-sha1 = "914177837d0d4e4ff13c9c5ad6081510b45a354a"
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uuid = "a15396b6-48d5-5d58-9928-6d29437db91e"
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version = "1.5.14"
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version = "1.6.0"
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[[OnlineStatsBase]]
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deps = ["AbstractTrees", "Dates", "LinearAlgebra", "OrderedCollections", "Statistics", "StatsBase"]
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git-tree-sha1 = "60e587c99ea261d1c452d2acb1f3a481e772660c"
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git-tree-sha1 = "7033456984dabcf39ec1d7f2c525344ef7bc12ec"
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uuid = "925886fa-5bf2-5e8e-b522-a9147a512338"
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version = "1.5.0"
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version = "1.6.0"
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[[OpenBLAS_jll]]
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deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
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@ -1682,9 +1682,9 @@ version = "0.5.5+0"
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[[Optim]]
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deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"]
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git-tree-sha1 = "1903afc76b7d01719d9c30d3c7d501b61db96721"
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git-tree-sha1 = "a89b11f0f354f06099e4001c151dffad7ebab015"
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uuid = "429524aa-4258-5aef-a3af-852621145aeb"
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version = "1.7.4"
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version = "1.7.5"
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[[Opus_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
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@ -1699,9 +1699,9 @@ version = "1.6.0"
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[[OrdinaryDiffEq]]
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deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SimpleNonlinearSolve", "SimpleUnPack", "SnoopPrecompile", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"]
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git-tree-sha1 = "9fb1f72106bfa1370006b90771cfbcce6c7468b6"
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git-tree-sha1 = "b639e192c0422c849aeda7240382375961d0cb4b"
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uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
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version = "6.49.4"
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version = "6.50.0"
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[[PCRE2_jll]]
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deps = ["Artifacts", "Libdl"]
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@ -1727,9 +1727,9 @@ version = "0.3.17"
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[[PaddedViews]]
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deps = ["OffsetArrays"]
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git-tree-sha1 = "03a7a85b76381a3d04c7a1656039197e70eda03d"
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git-tree-sha1 = "0fac6313486baae819364c52b4f483450a9d793f"
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uuid = "5432bcbf-9aad-5242-b902-cca2824c8663"
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version = "0.5.11"
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version = "0.5.12"
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[[Parameters]]
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deps = ["OrderedCollections", "UnPack"]
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@ -1790,9 +1790,9 @@ version = "1.3.4"
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[[Plots]]
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deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SnoopPrecompile", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"]
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git-tree-sha1 = "f49a45a239e13333b8b936120fe6d793fe58a972"
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git-tree-sha1 = "186d38ea29d5c4f238b2d9fe6e1653264101944b"
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uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
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version = "1.38.8"
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version = "1.38.9"
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[[PoissonRandom]]
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deps = ["Random"]
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@ -2076,9 +2076,9 @@ version = "0.3.3"
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[[SciMLBase]]
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deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SnoopPrecompile", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"]
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git-tree-sha1 = "49867ed9e315bb3604c8bb7eab27b4cd009adf8d"
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git-tree-sha1 = "392d3e28b05984496af37100ded94dc46fa6c8de"
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uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
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version = "1.91.6"
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version = "1.91.7"
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[[SciMLNLSolve]]
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deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"]
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@ -2226,9 +2226,9 @@ version = "1.3.0"
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[[StaticArrays]]
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deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"]
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git-tree-sha1 = "b8d897fe7fa688e93aef573711cb207c08c9e11e"
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git-tree-sha1 = "63e84b7fdf5021026d0f17f76af7c57772313d99"
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uuid = "90137ffa-7385-5640-81b9-e52037218182"
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version = "1.5.19"
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version = "1.5.21"
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[[StaticArraysCore]]
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git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a"
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@ -2259,9 +2259,9 @@ version = "1.3.0"
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[[StatsModels]]
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deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"]
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git-tree-sha1 = "06a230063087c11910e9bbd17ccbf5af792a27a4"
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git-tree-sha1 = "51cdf1afd9d78552e7a08536930d7abc3b288a5c"
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uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d"
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version = "0.7.0"
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version = "0.7.1"
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[[StatsPlots]]
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deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"]
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@ -2289,9 +2289,9 @@ version = "1.0.1"
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[[StrideArraysCore]]
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deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"]
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git-tree-sha1 = "f859ab67ca232b777a03a6cee588c1c15f7ec40a"
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git-tree-sha1 = "e2d60a1cd52d0583471f83bd5d2dcefa626d271f"
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uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da"
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version = "0.4.9"
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version = "0.4.10"
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[[StringEncodings]]
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deps = ["Libiconv_jll"]
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@ -2432,9 +2432,9 @@ version = "0.3.1"
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[[TranscodingStreams]]
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deps = ["Random", "Test"]
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git-tree-sha1 = "94f38103c984f89cf77c402f2a68dbd870f8165f"
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git-tree-sha1 = "0b829474fed270a4b0ab07117dce9b9a2fa7581a"
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uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
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version = "0.9.11"
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version = "0.9.12"
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[[TreeViews]]
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deps = ["Test"]
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@ -2495,9 +2495,9 @@ version = "0.4.1"
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[[UnicodePlots]]
|
||||
deps = ["ColorSchemes", "ColorTypes", "Contour", "Crayons", "Dates", "LinearAlgebra", "MarchingCubes", "NaNMath", "Printf", "Requires", "SnoopPrecompile", "SparseArrays", "StaticArrays", "StatsBase"]
|
||||
git-tree-sha1 = "a5bcfc23e352f499a1a46f428d0d3d7fb9e4fc11"
|
||||
git-tree-sha1 = "2825e58f6ec3cab889dfa2c824f8d89b9f7ee731"
|
||||
uuid = "b8865327-cd53-5732-bb35-84acbb429228"
|
||||
version = "3.4.1"
|
||||
version = "3.5.1"
|
||||
|
||||
[[Unzip]]
|
||||
git-tree-sha1 = "34db80951901073501137bdbc3d5a8e7bbd06670"
|
||||
|
|
@ -2761,15 +2761,15 @@ uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
|
|||
|
||||
[[Zstd_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl"]
|
||||
git-tree-sha1 = "c6edfe154ad7b313c01aceca188c05c835c67360"
|
||||
git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c"
|
||||
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
|
||||
version = "1.5.4+0"
|
||||
version = "1.5.5+0"
|
||||
|
||||
[[Zygote]]
|
||||
deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SnoopPrecompile", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
|
||||
git-tree-sha1 = "4df8f470806a45a8630ac8f597304821dc8e8838"
|
||||
git-tree-sha1 = "987ae5554ca90e837594a0f30325eeb5e7303d1e"
|
||||
uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
|
||||
version = "0.6.59"
|
||||
version = "0.6.60"
|
||||
|
||||
[[ZygoteRules]]
|
||||
deps = ["ChainRulesCore", "MacroTools"]
|
||||
|
|
|
|||
Loading…
Reference in a new issue