[⚡ AUTOMATED]: Pkg upgrade for 2024-03-02

Files changed:\nM	Manifest.toml

Manifest.toml

@@ -12,9 +12,9 @@ uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c"
 version = "1.5.0"
 
 [[AbstractTrees]]
-git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c"
+git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177"
 uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
-version = "0.4.4"
+version = "0.4.5"
 
 [[Accessors]]
 deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Requires", "Test"]
@@ -129,9 +129,9 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
 [[BenchmarkTools]]
 deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"]
-git-tree-sha1 = "f1f03a9fa24271160ed7e73051fba3c1a759b53f"
+git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f"
 uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
-version = "1.4.0"
+version = "1.5.0"
 
 [[BigWig]]
 deps = ["BBI", "BioCore", "BufferedStreams", "GenomicFeatures", "Libz"]
@@ -259,9 +259,9 @@ version = "1.63.0"
 
 [[ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "ad25e7d21ce10e01de973cdc68ad0f850a953c52"
+git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.21.1"
+version = "1.23.0"
 
 [[ChangesOfVariables]]
 deps = ["InverseFunctions", "LinearAlgebra", "Test"]
@@ -371,9 +371,9 @@ version = "0.3.0"
 
 [[Compat]]
 deps = ["Dates", "LinearAlgebra", "TOML", "UUIDs"]
-git-tree-sha1 = "75bd5b6fc5089df449b5d35fa501c846c9b6549b"
+git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "4.12.0"
+version = "4.14.0"
 
 [[CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -452,9 +452,9 @@ version = "1.6.1"
 
 [[DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
-git-tree-sha1 = "ac67408d9ddf207de5cfa9a97e114352430f01ed"
+git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2"
 uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-version = "0.18.16"
+version = "0.18.17"
 
 [[DataValueInterfaces]]
 git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
@@ -655,9 +655,9 @@ version = "0.3.2"
 
 [[FastLapackInterface]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "d576a29bf8bcabf4b1deb9abe88a3d7f78306ab5"
+git-tree-sha1 = "0a59c7d1002f3131de53dc4568a47d15a44daef7"
 uuid = "29a986be-02c6-4525-aec4-84b980013641"
-version = "2.0.1"
+version = "2.0.2"
 
 [[FileIO]]
 deps = ["Pkg", "Requires", "UUIDs"]
@@ -699,10 +699,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b"
 version = "2.13.93+0"
 
 [[Formatting]]
-deps = ["Printf"]
-git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8"
+deps = ["Logging", "Printf"]
+git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87"
 uuid = "59287772-0a20-5a39-b81b-1366585eb4c0"
-version = "0.4.2"
+version = "0.4.3"
 
 [[ForwardDiff]]
 deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
@@ -813,6 +813,12 @@ git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046"
 uuid = "78b55507-aeef-58d4-861c-77aaff3498b1"
 version = "0.21.0+0"
 
+[[Ghostscript_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "43ba3d3c82c18d88471cfd2924931658838c9d8f"
+uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b"
+version = "9.55.0+4"
+
 [[Glib_jll]]
 deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"]
 git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17"
@@ -981,15 +987,15 @@ version = "0.6.7"
 
 [[ImageMagick]]
 deps = ["FileIO", "ImageCore", "ImageMagick_jll", "InteractiveUtils"]
-git-tree-sha1 = "b0b765ff0b4c3ee20ce6740d843be8dfce48487c"
+git-tree-sha1 = "8e2eae13d144d545ef829324f1f0a5a4fe4340f3"
 uuid = "6218d12a-5da1-5696-b52f-db25d2ecc6d1"
-version = "1.3.0"
+version = "1.3.1"
 
 [[ImageMagick_jll]]
-deps = ["JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg", "Zlib_jll", "libpng_jll"]
-git-tree-sha1 = "1c0a2295cca535fabaf2029062912591e9b61987"
+deps = ["Artifacts", "Ghostscript_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "OpenJpeg_jll", "Pkg", "Zlib_jll", "libpng_jll"]
+git-tree-sha1 = "8d2e786fd090199a91ecbf4a66d03aedd0fb24d4"
 uuid = "c73af94c-d91f-53ed-93a7-00f77d67a9d7"
-version = "6.9.10-12+3"
+version = "6.9.11+4"
 
 [[ImageMetadata]]
 deps = ["AxisArrays", "ImageAxes", "ImageBase", "ImageCore"]
@@ -1150,9 +1156,9 @@ version = "0.5.0"
 
 [[JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
-git-tree-sha1 = "7c0008f0b7622c6c0ee5c65cbc667b69f8a65672"
+git-tree-sha1 = "5ea6acdd53a51d897672edb694e3cc2912f3f8a7"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.45"
+version = "0.4.46"
 
 [[JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
@@ -1198,15 +1204,15 @@ version = "0.1.5"
 
 [[JpegTurbo_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "60b1194df0a3298f460063de985eae7b01bc011a"
+git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23"
 uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8"
-version = "3.0.1+0"
+version = "3.0.2+0"
 
 [[JuliaInterpreter]]
 deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
-git-tree-sha1 = "04663b9e1eb0d0eabf76a6d0752e0dac83d53b36"
+git-tree-sha1 = "7b762d81887160169ddfc93a47e5fd7a6a3e78ef"
 uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
-version = "0.9.28"
+version = "0.9.29"
 
 [[JuliaWebAPI]]
 deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"]
@@ -1386,10 +1392,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828"
 version = "4.4.0+0"
 
 [[Libuuid_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066"
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5"
 uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700"
-version = "2.36.0+0"
+version = "2.39.3+0"
 
 [[Libz]]
 deps = ["BufferedStreams", "Random", "Test"]
@@ -1433,9 +1439,9 @@ version = "2.12.0+0"
 
 [[LogExpFunctions]]
 deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
-git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa"
+git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37"
 uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
-version = "0.3.26"
+version = "0.3.27"
 
 [[Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
@@ -1504,9 +1510,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
 [[MathOptInterface]]
 deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
-git-tree-sha1 = "569a003f93d7c64068d3afaab908d21f67a22cd5"
+git-tree-sha1 = "679c1aec6934d322783bd15db4d18f898653be4f"
 uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
-version = "1.25.3"
+version = "1.27.0"
 
 [[MbedTLS]]
 deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
@@ -1681,9 +1687,9 @@ version = "1.6.3"
 
 [[OnlineStatsBase]]
 deps = ["AbstractTrees", "Dates", "LinearAlgebra", "OrderedCollections", "Statistics", "StatsBase"]
-git-tree-sha1 = "47522be41435222ada35dac4cf4e58a9cc6faded"
+git-tree-sha1 = "6aa22dda15d3387639210d382fafc4f2a84b4fb9"
 uuid = "925886fa-5bf2-5e8e-b522-a9147a512338"
-version = "1.6.2"
+version = "1.6.3"
 
 [[OpenBLAS_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
@@ -1911,9 +1917,9 @@ version = "1.2.0"
 
 [[Preferences]]
 deps = ["TOML"]
-git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e"
+git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf"
 uuid = "21216c6a-2e73-6563-6e65-726566657250"
-version = "1.4.1"
+version = "1.4.2"
 
 [[PrettyTables]]
 deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"]
@@ -1923,9 +1929,9 @@ version = "2.3.1"
 
 [[Primes]]
 deps = ["IntegerMathUtils"]
-git-tree-sha1 = "1d05623b5952aed1307bf8b43bec8b8d1ef94b6e"
+git-tree-sha1 = "cb420f77dc474d23ee47ca8d14c90810cafe69e7"
 uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae"
-version = "0.5.5"
+version = "0.5.6"
 
 [[Printf]]
 deps = ["Unicode"]
@@ -2239,9 +2245,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
 [[SparseDiffTools]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
-git-tree-sha1 = "3b38ae7a1cbe9b8b1344359599753957644b03d4"
+git-tree-sha1 = "a616ac46c38da60ac05cecf52064d44732edd05e"
 uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
-version = "2.16.0"
+version = "2.17.0"
 
 [[SparseInverseSubset]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
@@ -2281,9 +2287,9 @@ version = "1.5.0"
 
 [[StaticArrays]]
 deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore", "Statistics"]
-git-tree-sha1 = "7b0e9c14c624e435076d19aea1e5cbdec2b9ca37"
+git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.9.2"
+version = "1.9.3"
 
 [[StaticArraysCore]]
 git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d"
@@ -2366,10 +2372,10 @@ uuid = "354b36f9-a18e-4713-926e-db85100087ba"
 version = "1.3.3"
 
 [[StructArrays]]
-deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"]
-git-tree-sha1 = "1b0b1205a56dc288b71b1961d48e351520702e24"
+deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "SparseArrays", "StaticArrays", "Tables"]
+git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be"
 uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
-version = "0.6.17"
+version = "0.6.18"
 
 [[StructTypes]]
 deps = ["Dates", "UUIDs"]
@@ -2651,9 +2657,9 @@ version = "0.3.1"
 
 [[XML2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
-git-tree-sha1 = "801cbe47eae69adc50f36c3caec4758d2650741b"
+git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105"
 uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
-version = "2.12.2+0"
+version = "2.12.5+0"
 
 [[XMLDict]]
 deps = ["EzXML", "IterTools", "OrderedCollections"]
@@ -2669,9 +2675,9 @@ version = "1.1.34+0"
 
 [[XZ_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "522b8414d40c4cbbab8dee346ac3a09f9768f25d"
+git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a"
 uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
-version = "5.4.5+0"
+version = "5.6.0+0"
 
 [[Xorg_libX11_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
@@ -2812,10 +2818,10 @@ uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1"
 version = "1.2.2"
 
 [[ZeroMQ_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "libsodium_jll"]
-git-tree-sha1 = "fe5c65a526f066fb3000da137d5785d9649a8a47"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"]
+git-tree-sha1 = "42f97fb27394378591666ab0e9cee369e6d0e1f9"
 uuid = "8f1865be-045e-5c20-9c9f-bfbfb0764568"
-version = "4.3.4+0"
+version = "4.3.5+0"
 
 [[Zlib_jll]]
 deps = ["Libdl"]
@@ -2871,9 +2877,9 @@ version = "2.0.2+0"
 
 [[libpng_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
-git-tree-sha1 = "873b4f805771d3e4bafe63af759a26ea8ca84d14"
+git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024"
 uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
-version = "1.6.42+0"
+version = "1.6.43+0"
 
 [[libsixel_jll]]
 deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"]