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[⚡ AUTOMATED]: Pkg upgrade for 2022-08-02

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Files changed:\nM	Manifest.toml
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MillironX 2022-08-02 02:13:55 +00:00
parent bb3c4be0c6
commit 64a123345d
1 changed files with 51 additions and 33 deletions
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Manifest.toml
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@ -52,9 +52,9 @@ version = "6.0.21"
[[ArrayInterfaceCore]] [[ArrayInterfaceCore]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "8d9e48436c5589fbd51ae8c8165a299a219188c0" git-tree-sha1 = "12bebdb8491042f36c8700705f11c28fef284515"
uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2"
version = "0.1.15" version = "0.1.16"
[[ArrayInterfaceGPUArrays]] [[ArrayInterfaceGPUArrays]]
deps = ["Adapt", "ArrayInterfaceCore", "GPUArraysCore", "LinearAlgebra"] deps = ["Adapt", "ArrayInterfaceCore", "GPUArraysCore", "LinearAlgebra"]
@ -82,9 +82,9 @@ version = "0.1.0"
[[ArrayLayouts]] [[ArrayLayouts]]
deps = ["FillArrays", "LinearAlgebra", "SparseArrays"] deps = ["FillArrays", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "ebe4bbfc4de38ef88323f67d60a4e848fb550f0e" git-tree-sha1 = "eedb031c457f95f13cb843d8dab01bbc3ac48176"
uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
version = "0.8.9" version = "0.8.10"
[[Artifacts]] [[Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
@ -273,9 +273,9 @@ version = "0.2.2"
[[ChainRules]] [[ChainRules]]
deps = ["ChainRulesCore", "Compat", "Distributed", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics"] deps = ["ChainRulesCore", "Compat", "Distributed", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics"]
git-tree-sha1 = "e762b70af7c1d914f677d9588a1d3b32e5f832af" git-tree-sha1 = "d596983b9e9f7838b54758c575a2a460d0031ea0"
uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
version = "1.39.1" version = "1.39.2"
[[ChainRulesCore]] [[ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"] deps = ["Compat", "LinearAlgebra", "SparseArrays"]
@ -772,6 +772,12 @@ version = "1.8.0"
deps = ["Artifacts", "Libdl"] deps = ["Artifacts", "Libdl"]
uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d"
[[GPUArrays]]
deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
git-tree-sha1 = "73145f1d724b5ee0e90098aec39a65e9697429a6"
uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
version = "8.4.2"
[[GPUArraysCore]] [[GPUArraysCore]]
deps = ["Adapt"] deps = ["Adapt"]
git-tree-sha1 = "d88b17a38322e153c519f5a9ed8d91e9baa03d8f" git-tree-sha1 = "d88b17a38322e153c519f5a9ed8d91e9baa03d8f"
@ -1083,10 +1089,10 @@ deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
[[Interpolations]] [[Interpolations]]
deps = ["AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"]
git-tree-sha1 = "b7bc05649af456efc75d178846f47006c2c4c3c7" git-tree-sha1 = "23e651bbb8d00e9971015d0dd306b780edbdb6b9"
uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
version = "0.13.6" version = "0.14.3"
[[IntervalSets]] [[IntervalSets]]
deps = ["Dates", "Random", "Statistics"] deps = ["Dates", "Random", "Statistics"]
@ -1188,9 +1194,9 @@ version = "2.1.2+0"
[[JuliaInterpreter]] [[JuliaInterpreter]]
deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
git-tree-sha1 = "1101d9e5a062963612e8d2bd5bd653d73ae033f4" git-tree-sha1 = "0f960b1404abb0b244c1ece579a0ec78d056a5d1"
uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
version = "0.9.14" version = "0.9.15"
[[JuliaWebAPI]] [[JuliaWebAPI]]
deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"] deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"]
@ -1200,9 +1206,9 @@ version = "0.6.3"
[[JumpProcesses]] [[JumpProcesses]]
deps = ["ArrayInterfaceCore", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"] deps = ["ArrayInterfaceCore", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"]
git-tree-sha1 = "4aa139750616fee7216ddcb30652357c60c3683e" git-tree-sha1 = "065462b4dcf2ca4de9701cc86e20f24570ae4bac"
uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5"
version = "9.0.1" version = "9.1.0"
[[KLU]] [[KLU]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
@ -1218,9 +1224,9 @@ version = "0.2.1"
[[KernelDensity]] [[KernelDensity]]
deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"]
git-tree-sha1 = "0a7ca818440ce8c70ebb5d42ac4ebf3205675f04" git-tree-sha1 = "9816b296736292a80b9a3200eb7fbb57aaa3917a"
uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b"
version = "0.6.4" version = "0.6.5"
[[KmerAnalysis]] [[KmerAnalysis]]
deps = ["BioSequences", "Distributed", "ReadDatastores"] deps = ["BioSequences", "Distributed", "ReadDatastores"]
@ -1258,6 +1264,18 @@ git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434"
uuid = "88015f11-f218-50d7-93a8-a6af411a945d" uuid = "88015f11-f218-50d7-93a8-a6af411a945d"
version = "3.0.0+1" version = "3.0.0+1"
[[LLVM]]
deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
git-tree-sha1 = "e7e9184b0bf0158ac4e4aa9daf00041b5909bf1a"
uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
version = "4.14.0"
[[LLVMExtra_jll]]
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"]
git-tree-sha1 = "771bfe376249626d3ca12bcd58ba243d3f961576"
uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
version = "0.0.16+0"
[[LZO_jll]] [[LZO_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6"
@ -1482,9 +1500,9 @@ version = "0.7.8"
[[MbedTLS]] [[MbedTLS]]
deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"]
git-tree-sha1 = "9f4f5a42de3300439cb8300236925670f844a555" git-tree-sha1 = "14cb991ee7ccc6dabda93d310400575c3cae435b"
uuid = "739be429-bea8-5141-9913-cc70e7f3736d" uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
version = "1.1.1" version = "1.1.2"
[[MbedTLS_jll]] [[MbedTLS_jll]]
deps = ["Artifacts", "Libdl"] deps = ["Artifacts", "Libdl"]
@ -1623,9 +1641,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
[[NonlinearSolve]] [[NonlinearSolve]]
deps = ["ArrayInterfaceCore", "FiniteDiff", "ForwardDiff", "IterativeSolvers", "LinearAlgebra", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "UnPack"] deps = ["ArrayInterfaceCore", "FiniteDiff", "ForwardDiff", "IterativeSolvers", "LinearAlgebra", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "UnPack"]
git-tree-sha1 = "932bbdc22e6a2e0bae8dec35d32e4c8cb6c50f98" git-tree-sha1 = "a754a21521c0ab48d37f44bbac1eefd1387bdcfc"
uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
version = "0.3.21" version = "0.3.22"
[[Observables]] [[Observables]]
git-tree-sha1 = "fe29afdef3d0c4a8286128d4e45cc50621b1e43d" git-tree-sha1 = "fe29afdef3d0c4a8286128d4e45cc50621b1e43d"
@ -1800,10 +1818,10 @@ uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043"
version = "1.3.0" version = "1.3.0"
[[Plots]] [[Plots]]
deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"]
git-tree-sha1 = "0a0da27969e8b6b2ee67c112dcf7001a659049a0" git-tree-sha1 = "05873db92e703f134649d88b8a164f3b7acb4d73"
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
version = "1.31.4" version = "1.31.5"
[[PoissonRandom]] [[PoissonRandom]]
deps = ["Random"] deps = ["Random"]
@ -1825,9 +1843,9 @@ version = "0.1.7"
[[Polynomials]] [[Polynomials]]
deps = ["LinearAlgebra", "MutableArithmetics", "RecipesBase"] deps = ["LinearAlgebra", "MutableArithmetics", "RecipesBase"]
git-tree-sha1 = "d6de04fd2559ecab7e9a683c59dcbc7dbd20581a" git-tree-sha1 = "8cc4b1a1d81b1db45dea3512040be7f0e84bfef9"
uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45"
version = "3.1.5" version = "3.1.6"
[[PooledArrays]] [[PooledArrays]]
deps = ["DataAPI", "Future"] deps = ["DataAPI", "Future"]
@ -2176,9 +2194,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
[[SparseDiffTools]] [[SparseDiffTools]]
deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArrays", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays", "VertexSafeGraphs"] deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArrays", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays", "VertexSafeGraphs"]
git-tree-sha1 = "32025c052719c6353f22f7c6de7d7b97b7cd2c88" git-tree-sha1 = "75b219d2de55a04c8be38ddabf5cbbd567df1abb"
uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
version = "1.24.0" version = "1.25.0"
[[SpecialFunctions]] [[SpecialFunctions]]
deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
@ -2245,9 +2263,9 @@ version = "0.6.30"
[[StatsPlots]] [[StatsPlots]]
deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] deps = ["AbstractFFTs", "Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"]
git-tree-sha1 = "b422791c9db86c777cf5887d768a8bcbfffc43eb" git-tree-sha1 = "2b35ba790f1f823872dcf378a6d3c3b520092eac"
uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd"
version = "0.15.0" version = "0.15.1"
[[SteadyStateDiffEq]] [[SteadyStateDiffEq]]
deps = ["DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "NLsolve", "Reexport", "SciMLBase"] deps = ["DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "NLsolve", "Reexport", "SciMLBase"]
@ -2477,9 +2495,9 @@ version = "0.5.3"
[[VectorizationBase]] [[VectorizationBase]]
deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"]
git-tree-sha1 = "81d19dae338dd4cf3ecd6331fb4763a1002f9580" git-tree-sha1 = "7446183197e8a91c46e2c7b25667901451deff40"
uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"
version = "0.21.43" version = "0.21.44"
[[VertexSafeGraphs]] [[VertexSafeGraphs]]
deps = ["Graphs"] deps = ["Graphs"]
@ -2722,10 +2740,10 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.2+0" version = "1.5.2+0"
[[Zygote]] [[Zygote]]
deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
git-tree-sha1 = "3cfdb31b517eec4173584fba2b1aa65daad46e09" git-tree-sha1 = "91822d41345b9b9b84babe4debd18dd6ccf45311"
uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
version = "0.6.41" version = "0.6.43"
[[ZygoteRules]] [[ZygoteRules]]
deps = ["MacroTools"] deps = ["MacroTools"]