millironx/docker-BioJulia
1
0
Fork 0
mirror of https://github.com/MillironX/docker-BioJulia.git synced 2024-11-24 23:49:55 +00:00
Code Issues Releases Packages Activity

[⚡ AUTOMATED]: Pkg upgrade for 2022-04-16

Browse source 
Files changed:\nM	Manifest.toml
This commit is contained in:
MillironX 2022-04-16 01:28:00 +00:00
parent aa4f228ae6
commit 86f9f6da18
1 changed files with 87 additions and 81 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

168
Manifest.toml
View file

@ -34,15 +34,15 @@ version = "0.1.0"
[[Arpack]] [[Arpack]]
deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"]
git-tree-sha1 = "288d58589d4249a63095f3f41ece91bf34c32c19" git-tree-sha1 = "91ca22c4b8437da89b030f08d71db55a379ce958"
uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"
version = "0.5.0" version = "0.5.3"
[[Arpack_jll]] [[Arpack_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] deps = ["Libdl", "OpenBLAS_jll", "Pkg"]
git-tree-sha1 = "4c31b0101997beb213a9e6c39116b052e73ca38c" git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7"
uuid = "68821587-b530-5797-8361-c406ea357684" uuid = "68821587-b530-5797-8361-c406ea357684"
version = "3.8.0+0" version = "3.5.0+3"
[[ArrayInterface]] [[ArrayInterface]]
deps = ["Compat", "IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"] deps = ["Compat", "IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"]
@ -207,10 +207,10 @@ uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
version = "0.4.1" version = "0.4.1"
[[CPUSummary]] [[CPUSummary]]
deps = ["IfElse", "Static"] deps = ["CpuId", "IfElse", "Static"]
git-tree-sha1 = "48e01b22ef077b07541309652f697595f8decf25" git-tree-sha1 = "913b28a04929053e4310d0a4915f1efe195c0ce6"
uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9"
version = "0.1.18" version = "0.1.19"
[[CSSUtil]] [[CSSUtil]]
deps = ["Colors", "JSON", "Markdown", "Measures", "WebIO"] deps = ["Colors", "JSON", "Markdown", "Measures", "WebIO"]
@ -362,9 +362,9 @@ version = "0.3.0"
[[Compat]] [[Compat]]
deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
git-tree-sha1 = "96b0bc6c52df76506efc8a441c6cf1adcb1babc4" git-tree-sha1 = "b153278a25dd42c65abbf4e62344f9d22e59191b"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "3.42.0" version = "3.43.0"
[[CompilerSupportLibraries_jll]] [[CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"] deps = ["Artifacts", "Libdl"]
@ -393,6 +393,12 @@ git-tree-sha1 = "681ea870b918e7cff7111da58791d7f718067a19"
uuid = "150eb455-5306-5404-9cee-2592286d6298" uuid = "150eb455-5306-5404-9cee-2592286d6298"
version = "0.6.2" version = "0.6.2"
[[CpuId]]
deps = ["Markdown"]
git-tree-sha1 = "32d125af0fb8ec3f8935896122c5e345709909e5"
uuid = "adafc99b-e345-5852-983c-f28acb93d879"
version = "0.3.0"
[[Crayons]] [[Crayons]]
git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
@ -422,9 +428,9 @@ version = "1.9.0"
[[DataFrames]] [[DataFrames]]
deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
git-tree-sha1 = "ae02104e835f219b8930c7664b8012c93475c340" git-tree-sha1 = "6c19003824cbebd804a51211fd3bbd81bf1ecad5"
uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
version = "1.3.2" version = "1.3.3"
[[DataStructures]] [[DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"] deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
@ -477,9 +483,9 @@ version = "0.4.0"
[[DiffEqBase]] [[DiffEqBase]]
deps = ["ArrayInterface", "ChainRulesCore", "DEDataArrays", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "IterativeSolvers", "LabelledArrays", "LinearAlgebra", "Logging", "MuladdMacro", "NonlinearSolve", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "ZygoteRules"] deps = ["ArrayInterface", "ChainRulesCore", "DEDataArrays", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "IterativeSolvers", "LabelledArrays", "LinearAlgebra", "Logging", "MuladdMacro", "NonlinearSolve", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "ZygoteRules"]
git-tree-sha1 = "d1c8d8b645500d7dffec3355d29af6c4f8bfa6df" git-tree-sha1 = "cde20558d9a50ebef5f173aaa0e6ece8ca563c93"
uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
version = "6.82.3" version = "6.83.1"
[[DiffEqCallbacks]] [[DiffEqCallbacks]]
deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NLsolve", "OrdinaryDiffEq", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArrays"] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NLsolve", "OrdinaryDiffEq", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArrays"]
@ -561,12 +567,6 @@ git-tree-sha1 = "3f3a2501fa7236e9b911e0f7a588c657e822bb6d"
uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5" uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5"
version = "2.2.3+0" version = "2.2.3+0"
[[EllipsisNotation]]
deps = ["ArrayInterface"]
git-tree-sha1 = "d064b0340db45d48893e7604ec95e7a2dc9da904"
uuid = "da5c29d0-fa7d-589e-88eb-ea29b0a81949"
version = "1.5.0"
[[Expat_jll]] [[Expat_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d"
@ -574,10 +574,10 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
version = "2.4.8+0" version = "2.4.8+0"
[[ExponentialUtilities]] [[ExponentialUtilities]]
deps = ["ArrayInterface", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "libblastrampoline_jll"] deps = ["ArrayInterface", "GenericSchur", "LinearAlgebra", "Printf", "Requires", "SparseArrays", "libblastrampoline_jll"]
git-tree-sha1 = "b026981973ccbe38682fbb4ccb0732fd6b1e1207" git-tree-sha1 = "951c44b4af9d1e061d5cf789a30881471604c14c"
uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18"
version = "1.13.0" version = "1.14.0"
[[EzXML]] [[EzXML]]
deps = ["Printf", "XML2_jll"] deps = ["Printf", "XML2_jll"]
@ -735,9 +735,9 @@ version = "3.3.6+0"
[[GLM]] [[GLM]]
deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "StatsModels"] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "StatsModels"]
git-tree-sha1 = "609115155b0dc532fa5130de65ed086efd27bfbd" git-tree-sha1 = "92b8d38886445d6d06e5f13201e57d018c4ff880"
uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a"
version = "1.6.2" version = "1.7.0"
[[GMP_jll]] [[GMP_jll]]
deps = ["Artifacts", "Libdl"] deps = ["Artifacts", "Libdl"]
@ -755,6 +755,12 @@ git-tree-sha1 = "cd6efcf9dc746b06709df14e462f0a3fe0786b1e"
uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
version = "0.64.2+0" version = "0.64.2+0"
[[GenericSchur]]
deps = ["LinearAlgebra", "Printf"]
git-tree-sha1 = "fb69b2a645fa69ba5f474af09221b9308b160ce6"
uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e"
version = "0.5.3"
[[GenomeGraphs]] [[GenomeGraphs]]
deps = ["BioSequences", "FASTX", "ReadDatastores"] deps = ["BioSequences", "FASTX", "ReadDatastores"]
git-tree-sha1 = "901468d589c1432556e5b982d1a9618617e25c36" git-tree-sha1 = "901468d589c1432556e5b982d1a9618617e25c36"
@ -862,17 +868,11 @@ git-tree-sha1 = "303d70c961317c4c20fafaf5dbe0e6d610c38542"
uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8"
version = "2.7.1+0" version = "2.7.1+0"
[[HypergeometricFunctions]]
deps = ["DualNumbers", "LinearAlgebra", "SpecialFunctions", "Test"]
git-tree-sha1 = "65e4589030ef3c44d3b90bdc5aac462b4bb05567"
uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
version = "0.3.8"
[[HypothesisTests]] [[HypothesisTests]]
deps = ["Combinatorics", "Distributions", "LinearAlgebra", "Random", "Rmath", "Roots", "Statistics", "StatsBase"] deps = ["Combinatorics", "Distributions", "LinearAlgebra", "Random", "Rmath", "Roots", "Statistics", "StatsBase"]
git-tree-sha1 = "d49e34c0b93e4281391710f70ae648d76c377d35" git-tree-sha1 = "689b4a7bfdc37cae37d9362228b2abdb0b573056"
uuid = "09f84164-cd44-5f33-b23f-e6b0d136a0d5" uuid = "09f84164-cd44-5f33-b23f-e6b0d136a0d5"
version = "0.10.8" version = "0.10.9"
[[IRTools]] [[IRTools]]
deps = ["InteractiveUtils", "MacroTools", "Test"] deps = ["InteractiveUtils", "MacroTools", "Test"]
@ -977,9 +977,9 @@ version = "0.9.4"
[[Images]] [[Images]]
deps = ["Base64", "FileIO", "Graphics", "ImageAxes", "ImageBase", "ImageContrastAdjustment", "ImageCore", "ImageDistances", "ImageFiltering", "ImageIO", "ImageMagick", "ImageMetadata", "ImageMorphology", "ImageQualityIndexes", "ImageSegmentation", "ImageShow", "ImageTransformations", "IndirectArrays", "IntegralArrays", "Random", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "StatsBase", "TiledIteration"] deps = ["Base64", "FileIO", "Graphics", "ImageAxes", "ImageBase", "ImageContrastAdjustment", "ImageCore", "ImageDistances", "ImageFiltering", "ImageIO", "ImageMagick", "ImageMetadata", "ImageMorphology", "ImageQualityIndexes", "ImageSegmentation", "ImageShow", "ImageTransformations", "IndirectArrays", "IntegralArrays", "Random", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "StatsBase", "TiledIteration"]
git-tree-sha1 = "11d268adba1869067620659e7cdf07f5e54b6c76" git-tree-sha1 = "03d1301b7ec885b266c0f816f338368c6c0b81bd"
uuid = "916415d5-f1e6-5110-898d-aaa5f9f070e0" uuid = "916415d5-f1e6-5110-898d-aaa5f9f070e0"
version = "0.25.1" version = "0.25.2"
[[Imath_jll]] [[Imath_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@ -1027,9 +1027,9 @@ version = "0.1.0"
[[IntegralArrays]] [[IntegralArrays]]
deps = ["ColorTypes", "FixedPointNumbers", "IntervalSets"] deps = ["ColorTypes", "FixedPointNumbers", "IntervalSets"]
git-tree-sha1 = "cf737764159c66b95cdbf5c10484929b247fecfe" git-tree-sha1 = "509075560b9fce23fdb3ccb4cc97935f11a43aa0"
uuid = "1d092043-8f09-5a30-832f-7509e371ab51" uuid = "1d092043-8f09-5a30-832f-7509e371ab51"
version = "0.1.3" version = "0.1.4"
[[IntelOpenMP_jll]] [[IntelOpenMP_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@ -1060,10 +1060,10 @@ uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
version = "0.13.5" version = "0.13.5"
[[IntervalSets]] [[IntervalSets]]
deps = ["Dates", "EllipsisNotation", "Statistics"] deps = ["Dates", "Statistics"]
git-tree-sha1 = "bcf640979ee55b652f3b01650444eb7bbe3ea837" git-tree-sha1 = "eb381d885e30ef859068fce929371a8a5d06a914"
uuid = "8197267c-284f-5f27-9208-e0e47529a953" uuid = "8197267c-284f-5f27-9208-e0e47529a953"
version = "0.5.4" version = "0.6.1"
[[IntervalTrees]] [[IntervalTrees]]
deps = ["InteractiveUtils", "Profile", "Random", "Test"] deps = ["InteractiveUtils", "Profile", "Random", "Test"]
@ -1159,9 +1159,9 @@ version = "2.1.2+0"
[[JuliaInterpreter]] [[JuliaInterpreter]]
deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
git-tree-sha1 = "cd6ce9cee498f6b044357cb439f2a3fea3d450df" git-tree-sha1 = "52617c41d2761cc05ed81fe779804d3b7f14fff7"
uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
version = "0.9.12" version = "0.9.13"
[[JuliaWebAPI]] [[JuliaWebAPI]]
deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"] deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"]
@ -1207,9 +1207,9 @@ version = "0.8.0"
[[KrylovKit]] [[KrylovKit]]
deps = ["LinearAlgebra", "Printf"] deps = ["LinearAlgebra", "Printf"]
git-tree-sha1 = "0328ad9966ae29ccefb4e1b9bfd8c8867e4360df" git-tree-sha1 = "49b0c1dd5c292870577b8f58c51072bd558febb9"
uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77"
version = "0.5.3" version = "0.5.4"
[[LAME_jll]] [[LAME_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@ -1371,18 +1371,18 @@ version = "2.12.0+0"
[[LogExpFunctions]] [[LogExpFunctions]]
deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "58f25e56b706f95125dcb796f39e1fb01d913a71" git-tree-sha1 = "a970d55c2ad8084ca317a4658ba6ce99b7523571"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.3.10" version = "0.3.12"
[[Logging]] [[Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
[[LoopVectorization]] [[LoopVectorization]]
deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDDualNumbers", "SLEEFPirates", "SpecialFunctions", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"] deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDDualNumbers", "SLEEFPirates", "SpecialFunctions", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"]
git-tree-sha1 = "aa73a4f9379db5b4d573bce890289fb34239403d" git-tree-sha1 = "4acc35e95bf18de5e9562d27735bef0950f2ed74"
uuid = "bdcacae8-1622-11e9-2a5c-532679323890" uuid = "bdcacae8-1622-11e9-2a5c-532679323890"
version = "0.12.105" version = "0.12.108"
[[Lz4_jll]] [[Lz4_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@ -1662,9 +1662,9 @@ version = "1.4.1"
[[OrdinaryDiffEq]] [[OrdinaryDiffEq]]
deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"]
git-tree-sha1 = "adb3b4eec5bd0234dc55b7459d61276a870436c2" git-tree-sha1 = "c5568ed45ee56cb4a5e3cebff3b91541ae016a83"
uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
version = "6.8.0" version = "6.9.0"
[[PCRE_jll]] [[PCRE_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@ -1762,9 +1762,9 @@ version = "0.4.0"
[[Polyester]] [[Polyester]]
deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StrideArraysCore", "ThreadingUtilities"] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StrideArraysCore", "ThreadingUtilities"]
git-tree-sha1 = "ad769d3f29cffb33380ab28318a10c1ccb19c827" git-tree-sha1 = "8d95a735921204f5d551ac300b20d802a150433a"
uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588"
version = "0.6.7" version = "0.6.8"
[[PolyesterWeave]] [[PolyesterWeave]]
deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"]
@ -1785,10 +1785,10 @@ uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
version = "1.4.1" version = "1.4.1"
[[PopGen]] [[PopGen]]
deps = ["DataFrames", "Distributions", "MultipleTesting", "PooledArrays", "PopGenCore", "ProgressMeter", "Random", "Reexport", "StatsBase"] deps = ["Clustering", "DataFrames", "Distributions", "MultipleTesting", "MultivariateStats", "PooledArrays", "PopGenCore", "ProgressMeter", "Random", "Reexport", "StatsBase"]
git-tree-sha1 = "2b2cfa0d7a8659e8f0b1c2ef5be8d5ccc8b88986" git-tree-sha1 = "f696f6c338adc3d328cd8e9b52fabb2c84fe5db3"
uuid = "af524d12-c74b-11e9-22a8-3b091653023f" uuid = "af524d12-c74b-11e9-22a8-3b091653023f"
version = "0.7.1" version = "0.8.0"
[[PopGenCore]] [[PopGenCore]]
deps = ["CSV", "CodecZlib", "DataFrames", "PooledArrays", "Random", "StaticArrays", "StatsBase", "VariantCallFormat"] deps = ["CSV", "CodecZlib", "DataFrames", "PooledArrays", "Random", "StaticArrays", "StatsBase", "VariantCallFormat"]
@ -1798,9 +1798,9 @@ version = "0.5.1"
[[Poppler_jll]] [[Poppler_jll]]
deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "OpenJpeg_jll", "Pkg", "libpng_jll"] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "OpenJpeg_jll", "Pkg", "libpng_jll"]
git-tree-sha1 = "02148a0cb2532f22c0589ceb75c110e168fb3d1f" git-tree-sha1 = "e11443687ac151ac6ef6699eb75f964bed8e1faa"
uuid = "9c32591e-4766-534b-9725-b71a8799265b" uuid = "9c32591e-4766-534b-9725-b71a8799265b"
version = "21.9.0+0" version = "0.87.0+2"
[[PositiveFactorizations]] [[PositiveFactorizations]]
deps = ["LinearAlgebra"] deps = ["LinearAlgebra"]
@ -1878,9 +1878,9 @@ version = "0.16.3"
[[Quaternions]] [[Quaternions]]
deps = ["DualNumbers", "LinearAlgebra", "Random"] deps = ["DualNumbers", "LinearAlgebra", "Random"]
git-tree-sha1 = "3754f35199da1bb4a55211ddbfd64cb1efee2272" git-tree-sha1 = "b327e4db3f2202a4efafe7569fcbe409106a1f75"
uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0" uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0"
version = "0.5.4" version = "0.5.6"
[[REPL]] [[REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
@ -1938,15 +1938,15 @@ version = "0.5.2"
[[RecursiveArrayTools]] [[RecursiveArrayTools]]
deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "LinearAlgebra", "RecipesBase", "Requires", "StaticArrays", "Statistics", "ZygoteRules"] deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "DocStringExtensions", "FillArrays", "LinearAlgebra", "RecipesBase", "Requires", "StaticArrays", "Statistics", "ZygoteRules"]
git-tree-sha1 = "f5dd036acee4462949cc10c55544cc2bee2545d6" git-tree-sha1 = "bfe14f127f3e7def02a6c2b1940b39d0dabaa3ef"
uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
version = "2.25.1" version = "2.26.3"
[[RecursiveFactorization]] [[RecursiveFactorization]]
deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "StrideArraysCore", "TriangularSolve"] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "StrideArraysCore", "TriangularSolve"]
git-tree-sha1 = "7ad4c2ef15b7aecd767b3921c0d255d39b3603ea" git-tree-sha1 = "a9a852c7ebb08e2a40e8c0ab9830a744fa283690"
uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4"
version = "0.2.9" version = "0.2.10"
[[Reexport]] [[Reexport]]
git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
@ -1991,9 +1991,9 @@ version = "0.3.0+0"
[[Roots]] [[Roots]]
deps = ["CommonSolve", "Printf", "Setfield"] deps = ["CommonSolve", "Printf", "Setfield"]
git-tree-sha1 = "838b60ee62bebc794864c880a47e331e00c47505" git-tree-sha1 = "e382260f6482c27b5062eba923e36fde2f5ab0b9"
uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
version = "1.4.1" version = "2.0.0"
[[Rotations]] [[Rotations]]
deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays", "Statistics"] deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays", "Statistics"]
@ -2022,9 +2022,9 @@ version = "0.1.0"
[[SLEEFPirates]] [[SLEEFPirates]]
deps = ["IfElse", "Static", "VectorizationBase"] deps = ["IfElse", "Static", "VectorizationBase"]
git-tree-sha1 = "d4c366b135fc2e1af7a000473e08edc5afd94819" git-tree-sha1 = "ac399b5b163b9140f9c310dfe9e9aaa225617ff6"
uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa"
version = "0.6.31" version = "0.6.32"
[[ScanByte]] [[ScanByte]]
deps = ["Libdl", "SIMD"] deps = ["Libdl", "SIMD"]
@ -2153,9 +2153,9 @@ uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
[[StatsAPI]] [[StatsAPI]]
deps = ["LinearAlgebra"] deps = ["LinearAlgebra"]
git-tree-sha1 = "c3d8ba7f3fa0625b062b82853a7d5229cb728b6b" git-tree-sha1 = "8d7530a38dbd2c397be7ddd01a424e4f411dcc41"
uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
version = "1.2.1" version = "1.2.2"
[[StatsBase]] [[StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
@ -2164,10 +2164,10 @@ uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.33.16" version = "0.33.16"
[[StatsFuns]] [[StatsFuns]]
deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] deps = ["ChainRulesCore", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
git-tree-sha1 = "72e6abd6fc9ef0fa62a159713c83b7637a14b2b8" git-tree-sha1 = "5950925ff997ed6fb3e985dcce8eb1ba42a0bbe7"
uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
version = "0.9.17" version = "0.9.18"
[[StatsModels]] [[StatsModels]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"]
@ -2195,9 +2195,9 @@ version = "6.46.0"
[[StrideArraysCore]] [[StrideArraysCore]]
deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "Requires", "SIMDTypes", "Static", "ThreadingUtilities"] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "Requires", "SIMDTypes", "Static", "ThreadingUtilities"]
git-tree-sha1 = "c7e0392560f15771003cce388fe8471d17941374" git-tree-sha1 = "df8fc9d0407a77241c529cc2ef97ba2e3436ff51"
uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da"
version = "0.2.19" version = "0.3.2"
[[StringEncodings]] [[StringEncodings]]
deps = ["Libiconv_jll"] deps = ["Libiconv_jll"]
@ -2269,6 +2269,12 @@ version = "1.7.0"
deps = ["ArgTools", "SHA"] deps = ["ArgTools", "SHA"]
uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
[[Tectonic]]
deps = ["Pkg"]
git-tree-sha1 = "0b3881685ddb3ab066159b2ce294dc54fcf3b9ee"
uuid = "9ac5f52a-99c6-489f-af81-462ef484790f"
version = "0.8.0"
[[TensorCore]] [[TensorCore]]
deps = ["LinearAlgebra"] deps = ["LinearAlgebra"]
git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6"
@ -2297,10 +2303,10 @@ uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69"
version = "0.5.4" version = "0.5.4"
[[TikzPictures]] [[TikzPictures]]
deps = ["LaTeXStrings", "Poppler_jll"] deps = ["LaTeXStrings", "Poppler_jll", "Requires", "Tectonic"]
git-tree-sha1 = "40d1559df48a5316eb66ad29ac734db6829e433d" git-tree-sha1 = "4e75374d207fefb21105074100034236fceed7cb"
uuid = "37f6aa50-8035-52d0-81c2-5a1d08754b2d" uuid = "37f6aa50-8035-52d0-81c2-5a1d08754b2d"
version = "3.2.0" version = "3.4.2"
[[TiledIteration]] [[TiledIteration]]
deps = ["OffsetArrays"] deps = ["OffsetArrays"]
@ -2380,9 +2386,9 @@ version = "0.5.3"
[[VectorizationBase]] [[VectorizationBase]]
deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "Hwloc", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "Hwloc", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"]
git-tree-sha1 = "460aacceb20a12ec187eb8ca183c5944dc6c99c4" git-tree-sha1 = "9d1b533f597d87ce9b4abd36a2ce4664f08e08ed"
uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"
version = "0.21.28" version = "0.21.29"
[[VertexSafeGraphs]] [[VertexSafeGraphs]]
deps = ["Graphs"] deps = ["Graphs"]
@ -2626,9 +2632,9 @@ version = "1.5.2+0"
[[Zygote]] [[Zygote]]
deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
git-tree-sha1 = "52adc0a505b6421a8668f13dcdb0c4cb498bd72c" git-tree-sha1 = "8c3e9ae8c2b520200df59d4f683a0dab65685ade"
uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
version = "0.6.37" version = "0.6.38"
[[ZygoteRules]] [[ZygoteRules]]
deps = ["MacroTools"] deps = ["MacroTools"]