[⚡ AUTOMATED]: Pkg upgrade for 2024-11-16

Files changed:\nM	Manifest.toml

Manifest.toml

@@ -259,9 +259,9 @@ version = "0.2.2"
 
 [[ChainRules]]
 deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
-git-tree-sha1 = "be227d253d132a6d57f9ccf5f67c0fb6488afd87"
+git-tree-sha1 = "9e2503a7ac8df599cbf422af95729b2d263220f6"
 uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
-version = "1.71.0"
+version = "1.72.0"
 
 [[ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
@@ -559,9 +559,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[Distributions]]
 deps = ["AliasTables", "ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"]
-git-tree-sha1 = "d7477ecdafb813ddee2ae727afa94e9dcb5f3fb0"
+git-tree-sha1 = "3101c32aab536e7a27b1763c0797dba151b899ad"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.112"
+version = "0.25.113"
 
 [[DocStringExtensions]]
 deps = ["LibGit2"]
@@ -592,9 +592,9 @@ version = "0.0.20230411+0"
 
 [[Expat_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7"
+git-tree-sha1 = "cc5231d52eb1771251fbd37171dbc408bcc8a1b6"
 uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
-version = "2.6.2+0"
+version = "2.6.4+0"
 
 [[ExponentialUtilities]]
 deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"]
@@ -668,9 +668,9 @@ version = "2.0.4"
 
 [[FileIO]]
 deps = ["Pkg", "Requires", "UUIDs"]
-git-tree-sha1 = "62ca0547a14c57e98154423419d8a342dca75ca9"
+git-tree-sha1 = "91e0e5c68d02bcdaae76d3c8ceb4361e8f28d2e9"
 uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
-version = "1.16.4"
+version = "1.16.5"
 
 [[FilePathsBase]]
 deps = ["Compat", "Dates", "Mmap", "Test"]
@@ -713,9 +713,9 @@ version = "0.4.3"
 
 [[ForwardDiff]]
 deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
-git-tree-sha1 = "a9ce73d3c827adab2d70bf168aaece8cce196898"
+git-tree-sha1 = "a2df1b776752e3f344e5116c06d75a10436ab853"
 uuid = "f6369f11-7733-5829-9624-2563aa707210"
-version = "0.10.37"
+version = "0.10.38"
 
 [[FreeType2_jll]]
 deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"]
@@ -804,9 +804,9 @@ version = "0.5.4"
 
 [[GenomicAnnotations]]
 deps = ["BioGenerics", "BioSequences", "CodecZlib", "DataFrames", "TranscodingStreams"]
-git-tree-sha1 = "244ce0dba5c6f9e63263e790f6ca4eb3ed4e29c5"
+git-tree-sha1 = "459c597419c90f8b004aef505e1358721f672658"
 uuid = "4f8a0a0a-376d-5ac0-ab14-e88793df67f0"
-version = "0.4.0"
+version = "0.4.2"
 
 [[GenomicFeatures]]
 deps = ["BioGenerics", "DataStructures", "IntervalTrees"]
@@ -834,9 +834,9 @@ version = "2.80.5+0"
 
 [[Graphics]]
 deps = ["Colors", "LinearAlgebra", "NaNMath"]
-git-tree-sha1 = "d61890399bc535850c4bf08e4e0d3a7ad0f21cbd"
+git-tree-sha1 = "a641238db938fff9b2f60d08ed9030387daf428c"
 uuid = "a2bd30eb-e257-5431-a919-1863eab51364"
-version = "1.1.2"
+version = "1.1.3"
 
 [[Graphite2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -905,9 +905,9 @@ version = "0.1.17"
 
 [[HypergeometricFunctions]]
 deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
-git-tree-sha1 = "7c4195be1649ae622304031ed46a2f4df989f1eb"
+git-tree-sha1 = "b1c2585431c382e3fe5805874bda6aea90a95de9"
 uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
-version = "0.3.24"
+version = "0.3.25"
 
 [[HypothesisTests]]
 deps = ["Combinatorics", "Distributions", "LinearAlgebra", "Printf", "Random", "Rmath", "Roots", "Statistics", "StatsAPI", "StatsBase"]
@@ -1074,9 +1074,9 @@ version = "0.1.2"
 
 [[IntegralArrays]]
 deps = ["ColorTypes", "FixedPointNumbers", "IntervalSets"]
-git-tree-sha1 = "be8e690c3973443bec584db3346ddc904d4884eb"
+git-tree-sha1 = "b842cbff3f44804a84fda409745cc8f04c029a20"
 uuid = "1d092043-8f09-5a30-832f-7509e371ab51"
-version = "0.1.5"
+version = "0.1.6"
 
 [[IntelOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"]
@@ -1205,9 +1205,9 @@ version = "3.0.4+0"
 
 [[JuliaInterpreter]]
 deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
-git-tree-sha1 = "2984284a8abcfcc4784d95a9e2ea4e352dd8ede7"
+git-tree-sha1 = "fc8504eca188aaae4345649ca6105806bc584b70"
 uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
-version = "0.9.36"
+version = "0.9.37"
 
 [[JuliaWebAPI]]
 deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"]
@@ -1499,9 +1499,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
 [[MathOptInterface]]
 deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
-git-tree-sha1 = "9a9905be768c496fb2f2c5fe34e2c9fe44b86e7a"
+git-tree-sha1 = "e065ca5234f53fd6f920efaee4940627ad991fb4"
 uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
-version = "1.33.0"
+version = "1.34.0"
 
 [[MbedTLS]]
 deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
@@ -1620,9 +1620,9 @@ version = "0.9.8"
 
 [[NearestNeighbors]]
 deps = ["Distances", "StaticArrays"]
-git-tree-sha1 = "3cebfc94a0754cc329ebc3bab1e6c89621e791ad"
+git-tree-sha1 = "8a3271d8309285f4db73b4f662b1b290c715e85e"
 uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce"
-version = "0.4.20"
+version = "0.4.21"
 
 [[Netpbm]]
 deps = ["FileIO", "ImageCore", "ImageMetadata"]
@@ -1638,9 +1638,9 @@ version = "1.0.0"
 
 [[Nettle_jll]]
 deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "d67b4fddbd1b07888ed2680646a44740f492f1ca"
+git-tree-sha1 = "19961ade0a39b98575505bed6f842e8a0ec35af9"
 uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b"
-version = "3.9.1+0"
+version = "3.10.0+0"
 
 [[NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
@@ -1686,9 +1686,9 @@ uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
 
 [[OpenEXR]]
 deps = ["Colors", "FileIO", "OpenEXR_jll"]
-git-tree-sha1 = "327f53360fdb54df7ecd01e96ef1983536d1e633"
+git-tree-sha1 = "97db9e07fe2091882c765380ef58ec553074e9c7"
 uuid = "52e1d378-f018-4a11-a4be-720524705ac7"
-version = "0.3.2"
+version = "0.3.3"
 
 [[OpenEXR_jll]]
 deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"]
@@ -1720,9 +1720,9 @@ version = "0.5.5+0"
 
 [[Optim]]
 deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "MathOptInterface", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"]
-git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89"
+git-tree-sha1 = "ab7edad78cdef22099f43c54ef77ac63c2c9cc64"
 uuid = "429524aa-4258-5aef-a3af-852621145aeb"
-version = "1.9.4"
+version = "1.10.0"
 
 [[Opus_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1961,9 +1961,9 @@ version = "1.2.1"
 
 [[QOI]]
 deps = ["ColorTypes", "FileIO", "FixedPointNumbers"]
-git-tree-sha1 = "18e8f4d1426e965c7b532ddd260599e1510d26ce"
+git-tree-sha1 = "8b3fc30bc0390abdce15f8822c889f669baed73d"
 uuid = "4b34888f-f399-49d4-9bb3-47ed5cae4e65"
-version = "1.0.0"
+version = "1.0.1"
 
 [[Qt5Base_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"]
@@ -2114,9 +2114,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
 
 [[SIMD]]
 deps = ["PrecompileTools"]
-git-tree-sha1 = "98ca7c29edd6fc79cd74c61accb7010a4e7aee33"
+git-tree-sha1 = "52af86e35dd1b177d051b12681e1c581f53c281b"
 uuid = "fdea26ae-647d-5447-a871-4b548cad5224"
-version = "3.6.0"
+version = "3.7.0"
 
 [[SIMDTypes]]
 git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c"
@@ -2167,9 +2167,9 @@ version = "1.2.1"
 
 [[SentinelArrays]]
 deps = ["Dates", "Random"]
-git-tree-sha1 = "305becf8af67eae1dbc912ee9097f00aeeabb8d5"
+git-tree-sha1 = "d0553ce4031a081cc42387a9b9c8441b7d99f32d"
 uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
-version = "1.4.6"
+version = "1.4.7"
 
 [[SequenceVariation]]
 deps = ["BioAlignments", "BioGenerics", "BioSequences", "BioSymbols"]
@@ -2628,9 +2628,9 @@ version = "1.5.9"
 
 [[Widgets]]
 deps = ["Colors", "Dates", "Observables", "OrderedCollections"]
-git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a"
+git-tree-sha1 = "e9aeb174f95385de31e70bd15fa066a505ea82b9"
 uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62"
-version = "0.6.6"
+version = "0.6.7"
 
 [[WinReg]]
 deps = ["Test"]
@@ -2663,9 +2663,9 @@ version = "0.3.1"
 
 [[XML2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
-git-tree-sha1 = "6a451c6f33a176150f315726eba8b92fbfdb9ae7"
+git-tree-sha1 = "a2fccc6559132927d4c5dc183e3e01048c6dcbd6"
 uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
-version = "2.13.4+0"
+version = "2.13.5+0"
 
 [[XMLDict]]
 deps = ["EzXML", "IterTools", "OrderedCollections"]
@@ -2841,9 +2841,9 @@ version = "1.5.6+1"
 
 [[Zygote]]
 deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
-git-tree-sha1 = "f816633be6dc5c0ed9ffedda157ecfda0b3b6a69"
+git-tree-sha1 = "c7dc3148a64d1cd3768c29b3db5972d1c302661b"
 uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
-version = "0.6.72"
+version = "0.6.73"
 
 [[ZygoteRules]]
 deps = ["ChainRulesCore", "MacroTools"]