mirror of
https://github.com/MillironX/docker-BioJulia.git
synced 2024-12-22 09:28:17 +00:00
[⚡ AUTOMATED]: Pkg upgrade for 2024-02-02
Files changed:\nM Manifest.toml
This commit is contained in:
parent
4beb475aea
commit
a83437894f
1 changed files with 80 additions and 62 deletions
142
Manifest.toml
142
Manifest.toml
|
@ -63,9 +63,9 @@ version = "7.5.1"
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[[ArrayLayouts]]
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deps = ["FillArrays", "LinearAlgebra", "SparseArrays"]
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git-tree-sha1 = "a45ec4acc9d905f94b47243cff666820bb107789"
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||||
git-tree-sha1 = "f5c3f5584f14322a0bd73362fd88b589dabd4019"
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||||
uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
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version = "1.5.2"
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version = "1.5.3"
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[[Artifacts]]
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uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
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@ -253,15 +253,15 @@ version = "0.2.2"
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[[ChainRules]]
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deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
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git-tree-sha1 = "0aa0a3dd7b9bacbbadf1932ccbdfa938985c5561"
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||||
git-tree-sha1 = "213f001d1233fd3b8ef007f50c8cab29061917d8"
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uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
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version = "1.58.1"
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version = "1.61.0"
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[[ChainRulesCore]]
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deps = ["Compat", "LinearAlgebra", "SparseArrays"]
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git-tree-sha1 = "c1deebd76f7a443d527fc0430d5758b8b2112ed8"
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git-tree-sha1 = "1287e3872d646eed95198457873249bd9f0caed2"
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||||
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
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version = "1.19.1"
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version = "1.20.1"
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[[ChangesOfVariables]]
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deps = ["InverseFunctions", "LinearAlgebra", "Test"]
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@ -289,15 +289,15 @@ version = "1.3.5"
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[[CodecBase]]
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deps = ["TranscodingStreams"]
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git-tree-sha1 = "5f984d989ae8ebf5d43290cfba36a24b35fb91e9"
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git-tree-sha1 = "1c2f3f3c2c3a024b6697e92e66d6b97815915d54"
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uuid = "6c391c72-fb7b-5838-ba82-7cfb1bcfecbf"
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version = "0.3.1"
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version = "0.3.2"
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[[CodecBzip2]]
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deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"]
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git-tree-sha1 = "c0ae2a86b162fb5d7acc65269b469ff5b8a73594"
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git-tree-sha1 = "9b1ca1aa6ce3f71b3d1840c538a8210a043625eb"
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uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd"
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version = "0.8.1"
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version = "0.8.2"
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[[CodecLz4]]
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deps = ["Lz4_jll", "TranscodingStreams"]
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@ -307,21 +307,21 @@ version = "0.4.1"
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[[CodecXz]]
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deps = ["Libdl", "TranscodingStreams", "XZ_jll"]
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git-tree-sha1 = "b0a742068c86bb9c7616f8e3c0d98199318b90a6"
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git-tree-sha1 = "893153d91e4b7af48bbe394d6094451938390aba"
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uuid = "ba30903b-d9e8-5048-a5ec-d1f5b0d4b47b"
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version = "0.7.1"
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version = "0.7.2"
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[[CodecZlib]]
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deps = ["TranscodingStreams", "Zlib_jll"]
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git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
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git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73"
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uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
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version = "0.7.3"
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version = "0.7.4"
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[[CodecZstd]]
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deps = ["TranscodingStreams", "Zstd_jll"]
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git-tree-sha1 = "f69e46bf7b307d15a896b57d5b3321c01cd64923"
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git-tree-sha1 = "23373fecba848397b1705f6183188a0c0bc86917"
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uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2"
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version = "0.8.1"
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version = "0.8.2"
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[[ColorBrewer]]
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deps = ["Colors", "JSON", "Test"]
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@ -434,9 +434,9 @@ uuid = "717857b8-e6f2-59f4-9121-6e50c889abd2"
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version = "0.7.9"
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[[DataAPI]]
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git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
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git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
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uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
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version = "1.15.0"
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version = "1.16.0"
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[[DataDeps]]
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deps = ["BinaryProvider", "HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"]
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@ -632,9 +632,9 @@ version = "0.3.2"
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[[FFTW]]
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deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"]
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git-tree-sha1 = "ec22cbbcd01cba8f41eecd7d44aac1f23ee985e3"
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git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d"
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uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
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version = "1.7.2"
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version = "1.8.0"
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[[FFTW_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
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@ -655,9 +655,9 @@ version = "0.3.2"
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[[FastLapackInterface]]
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deps = ["LinearAlgebra"]
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git-tree-sha1 = "b12f05108e405dadcc2aff0008db7f831374e051"
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git-tree-sha1 = "d576a29bf8bcabf4b1deb9abe88a3d7f78306ab5"
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uuid = "29a986be-02c6-4525-aec4-84b980013641"
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version = "2.0.0"
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version = "2.0.1"
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[[FileIO]]
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deps = ["Pkg", "Requires", "UUIDs"]
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@ -884,6 +884,12 @@ git-tree-sha1 = "0341077e8a6b9fc1c2ea5edc1e93a956d2aec0c7"
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uuid = "eafb193a-b7ab-5a9e-9068-77385905fa72"
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version = "0.5.2"
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[[HistogramThresholding]]
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deps = ["ImageBase", "LinearAlgebra", "MappedArrays"]
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git-tree-sha1 = "7194dfbb2f8d945abdaf68fa9480a965d6661e69"
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uuid = "2c695a8d-9458-5d45-9878-1b8a99cf7853"
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version = "0.3.1"
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[[HostCPUFeatures]]
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deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"]
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git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2"
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@ -910,9 +916,9 @@ version = "69.1.0+0"
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[[IRTools]]
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deps = ["InteractiveUtils", "MacroTools", "Test"]
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git-tree-sha1 = "8aa91235360659ca7560db43a7d57541120aa31d"
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git-tree-sha1 = "5d8c5713f38f7bc029e26627b687710ba406d0dd"
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uuid = "7869d1d1-7146-5819-86e3-90919afe41df"
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version = "0.4.11"
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version = "0.4.12"
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[[IfElse]]
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git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
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@ -931,6 +937,12 @@ git-tree-sha1 = "b51bb8cae22c66d0f6357e3bcb6363145ef20835"
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uuid = "c817782e-172a-44cc-b673-b171935fbb9e"
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version = "0.1.5"
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[[ImageBinarization]]
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deps = ["HistogramThresholding", "ImageCore", "LinearAlgebra", "Polynomials", "Reexport", "Statistics"]
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git-tree-sha1 = "f5356e7203c4a9954962e3757c08033f2efe578a"
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uuid = "cbc4b850-ae4b-5111-9e64-df94c024a13d"
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version = "0.3.0"
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[[ImageContrastAdjustment]]
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deps = ["ImageBase", "ImageCore", "ImageTransformations", "Parameters"]
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git-tree-sha1 = "eb3d4365a10e3f3ecb3b115e9d12db131d28a386"
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@ -943,6 +955,12 @@ git-tree-sha1 = "acf614720ef026d38400b3817614c45882d75500"
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uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534"
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version = "0.9.4"
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[[ImageCorners]]
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deps = ["ImageCore", "ImageFiltering", "PrecompileTools", "StaticArrays", "StatsBase"]
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git-tree-sha1 = "24c52de051293745a9bad7d73497708954562b79"
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uuid = "89d5987c-236e-4e32-acd0-25bd6bd87b70"
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version = "0.1.3"
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[[ImageDistances]]
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deps = ["Distances", "ImageCore", "ImageMorphology", "LinearAlgebra", "Statistics"]
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git-tree-sha1 = "08b0e6354b21ef5dd5e49026028e41831401aca8"
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@ -980,10 +998,10 @@ uuid = "bc367c6b-8a6b-528e-b4bd-a4b897500b49"
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version = "0.9.9"
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[[ImageMorphology]]
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deps = ["ImageCore", "LinearAlgebra", "Requires", "TiledIteration"]
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git-tree-sha1 = "e7c68ab3df4a75511ba33fc5d8d9098007b579a8"
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deps = ["DataStructures", "ImageCore", "LinearAlgebra", "LoopVectorization", "OffsetArrays", "Requires", "TiledIteration"]
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git-tree-sha1 = "6f0a801136cb9c229aebea0df296cdcd471dbcd1"
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uuid = "787d08f9-d448-5407-9aad-5290dd7ab264"
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version = "0.3.2"
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version = "0.4.5"
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[[ImageQualityIndexes]]
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deps = ["ImageContrastAdjustment", "ImageCore", "ImageDistances", "ImageFiltering", "LazyModules", "OffsetArrays", "PrecompileTools", "Statistics"]
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@ -1004,16 +1022,16 @@ uuid = "4e3cecfd-b093-5904-9786-8bbb286a6a31"
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version = "0.3.8"
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[[ImageTransformations]]
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deps = ["AxisAlgorithms", "ColorVectorSpace", "CoordinateTransformations", "ImageBase", "ImageCore", "Interpolations", "OffsetArrays", "Rotations", "StaticArrays"]
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git-tree-sha1 = "8717482f4a2108c9358e5c3ca903d3a6113badc9"
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deps = ["AxisAlgorithms", "CoordinateTransformations", "ImageBase", "ImageCore", "Interpolations", "OffsetArrays", "Rotations", "StaticArrays"]
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git-tree-sha1 = "e0884bdf01bbbb111aea77c348368a86fb4b5ab6"
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uuid = "02fcd773-0e25-5acc-982a-7f6622650795"
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version = "0.9.5"
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version = "0.10.1"
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[[Images]]
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deps = ["Base64", "FileIO", "Graphics", "ImageAxes", "ImageBase", "ImageContrastAdjustment", "ImageCore", "ImageDistances", "ImageFiltering", "ImageIO", "ImageMagick", "ImageMetadata", "ImageMorphology", "ImageQualityIndexes", "ImageSegmentation", "ImageShow", "ImageTransformations", "IndirectArrays", "IntegralArrays", "Random", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "StatsBase", "TiledIteration"]
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git-tree-sha1 = "5fa9f92e1e2918d9d1243b1131abe623cdf98be7"
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deps = ["Base64", "FileIO", "Graphics", "ImageAxes", "ImageBase", "ImageBinarization", "ImageContrastAdjustment", "ImageCore", "ImageCorners", "ImageDistances", "ImageFiltering", "ImageIO", "ImageMagick", "ImageMetadata", "ImageMorphology", "ImageQualityIndexes", "ImageSegmentation", "ImageShow", "ImageTransformations", "IndirectArrays", "IntegralArrays", "Random", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "StatsBase", "TiledIteration"]
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git-tree-sha1 = "d438268ed7a665f8322572be0dabda83634d5f45"
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uuid = "916415d5-f1e6-5110-898d-aaa5f9f070e0"
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version = "0.25.3"
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version = "0.26.0"
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[[Imath_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl"]
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@ -1132,9 +1150,9 @@ version = "0.5.0"
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[[JLD2]]
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deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
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git-tree-sha1 = "853b9e0b876e8c7093a824c4f83c619d23525e64"
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git-tree-sha1 = "7c0008f0b7622c6c0ee5c65cbc667b69f8a65672"
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uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
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version = "0.4.43"
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version = "0.4.45"
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[[JLFzf]]
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deps = ["Pipe", "REPL", "Random", "fzf_jll"]
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@ -1460,9 +1478,9 @@ version = "0.5.13"
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[[MakieCore]]
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deps = ["Observables", "REPL"]
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git-tree-sha1 = "ec5db7bb2dc9b85072658dcb2d3ad09569b09ac9"
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git-tree-sha1 = "9b11acd07f21c4d035bd4156e789532e8ee2cc70"
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uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
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version = "0.7.2"
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version = "0.6.9"
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[[ManualMemory]]
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git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd"
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@ -1486,9 +1504,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
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[[MathOptInterface]]
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deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
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git-tree-sha1 = "e2ae8cf5ac6daf5a3959f7f6ded9c2028b61d09d"
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git-tree-sha1 = "8b40681684df46785a0012d352982e22ac3be59e"
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uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
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version = "1.25.1"
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version = "1.25.2"
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[[MbedTLS]]
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deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
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@ -1663,9 +1681,9 @@ version = "1.6.3"
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[[OnlineStatsBase]]
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deps = ["AbstractTrees", "Dates", "LinearAlgebra", "OrderedCollections", "Statistics", "StatsBase"]
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git-tree-sha1 = "790f151a4650b77850ec2313eae034e99823dafe"
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git-tree-sha1 = "47522be41435222ada35dac4cf4e58a9cc6faded"
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uuid = "925886fa-5bf2-5e8e-b522-a9147a512338"
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version = "1.6.1"
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version = "1.6.2"
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[[OpenBLAS_jll]]
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deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
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@ -1706,10 +1724,10 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
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version = "0.5.5+0"
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[[Optim]]
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deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"]
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git-tree-sha1 = "01f85d9269b13fedc61e63cc72ee2213565f7a72"
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deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "MathOptInterface", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"]
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git-tree-sha1 = "47fea72de134f75b105a5d4a1abe5c6aec89d390"
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uuid = "429524aa-4258-5aef-a3af-852621145aeb"
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version = "1.7.8"
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version = "1.9.1"
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[[Opus_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
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@ -1740,9 +1758,9 @@ version = "0.11.31"
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[[PGFPlots]]
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deps = ["ColorBrewer", "ColorSchemes", "Colors", "Contour", "DataFrames", "DelimitedFiles", "Discretizers", "Distributed", "ImageMagick", "Images", "Printf", "Requires", "StatsBase", "TikzPictures"]
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git-tree-sha1 = "f2009651b333a627c41731ae970f35144cadbff9"
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git-tree-sha1 = "a77cc33e3ec1704edc7ab8dca37ccff26d75766a"
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uuid = "3b7a836e-365b-5785-a47d-02c71176b4aa"
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version = "3.4.3"
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version = "3.4.4"
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[[PNGFiles]]
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deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
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@ -1844,10 +1862,10 @@ uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad"
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version = "0.2.1"
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[[Polynomials]]
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deps = ["LinearAlgebra", "MakieCore", "RecipesBase", "Setfield", "SparseArrays"]
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git-tree-sha1 = "a9c7a523d5ed375be3983db190f6a5874ae9286d"
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deps = ["ChainRulesCore", "LinearAlgebra", "MakieCore", "MutableArithmetics", "RecipesBase"]
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git-tree-sha1 = "3aa2bb4982e575acd7583f01531f241af077b163"
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uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45"
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version = "4.0.6"
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version = "3.2.13"
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[[PooledArrays]]
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deps = ["DataAPI", "Future"]
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@ -2069,9 +2087,9 @@ version = "0.4.0+0"
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[[Roots]]
|
||||
deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"]
|
||||
git-tree-sha1 = "af540898b1e6ca7aa6ba7213c05052809c6c522a"
|
||||
git-tree-sha1 = "39ebae5b76c8cd5629bec21adfca78b437dac1e6"
|
||||
uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
|
||||
version = "2.1.0"
|
||||
version = "2.1.1"
|
||||
|
||||
[[Rotations]]
|
||||
deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays"]
|
||||
|
@ -2221,9 +2239,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
|
|||
|
||||
[[SparseDiffTools]]
|
||||
deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
|
||||
git-tree-sha1 = "c281e11db4eacb36a292a054bac83c5a0aca2a26"
|
||||
git-tree-sha1 = "3b38ae7a1cbe9b8b1344359599753957644b03d4"
|
||||
uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
|
||||
version = "2.15.0"
|
||||
version = "2.16.0"
|
||||
|
||||
[[SparseInverseSubset]]
|
||||
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
|
||||
|
@ -2263,9 +2281,9 @@ version = "1.5.0"
|
|||
|
||||
[[StaticArrays]]
|
||||
deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore", "Statistics"]
|
||||
git-tree-sha1 = "f68dd04d131d9a8a8eb836173ee8f105c360b0c5"
|
||||
git-tree-sha1 = "7b0e9c14c624e435076d19aea1e5cbdec2b9ca37"
|
||||
uuid = "90137ffa-7385-5640-81b9-e52037218182"
|
||||
version = "1.9.1"
|
||||
version = "1.9.2"
|
||||
|
||||
[[StaticArraysCore]]
|
||||
git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d"
|
||||
|
@ -2349,9 +2367,9 @@ version = "1.3.3"
|
|||
|
||||
[[StructArrays]]
|
||||
deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"]
|
||||
git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213"
|
||||
git-tree-sha1 = "1b0b1205a56dc288b71b1961d48e351520702e24"
|
||||
uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
|
||||
version = "0.6.16"
|
||||
version = "0.6.17"
|
||||
|
||||
[[StructTypes]]
|
||||
deps = ["Dates", "UUIDs"]
|
||||
|
@ -2463,10 +2481,10 @@ uuid = "37f6aa50-8035-52d0-81c2-5a1d08754b2d"
|
|||
version = "3.5.0"
|
||||
|
||||
[[TiledIteration]]
|
||||
deps = ["OffsetArrays"]
|
||||
git-tree-sha1 = "5683455224ba92ef59db72d10690690f4a8dc297"
|
||||
deps = ["OffsetArrays", "StaticArrayInterface"]
|
||||
git-tree-sha1 = "1176cc31e867217b06928e2f140c90bd1bc88283"
|
||||
uuid = "06e1c1a7-607b-532d-9fad-de7d9aa2abac"
|
||||
version = "0.3.1"
|
||||
version = "0.5.0"
|
||||
|
||||
[[TranscodingStreams]]
|
||||
deps = ["Random", "Test"]
|
||||
|
@ -2811,9 +2829,9 @@ version = "1.5.5+0"
|
|||
|
||||
[[Zygote]]
|
||||
deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"]
|
||||
git-tree-sha1 = "30c1b8bfc2b3c7c5d8bba7cd32e8b6d5f968e7c3"
|
||||
git-tree-sha1 = "4ddb4470e47b0094c93055a3bcae799165cc68f1"
|
||||
uuid = "e88e6eb3-aa80-5325-afca-941959d7151f"
|
||||
version = "0.6.68"
|
||||
version = "0.6.69"
|
||||
|
||||
[[ZygoteRules]]
|
||||
deps = ["ChainRulesCore", "MacroTools"]
|
||||
|
|
Loading…
Reference in a new issue