mirror of
https://github.com/MillironX/docker-BioJulia.git
synced 2024-12-22 01:18:17 +00:00
[⚡ AUTOMATED]: Pkg upgrade for 2023-12-02
Files changed:\nM Manifest.toml
This commit is contained in:
parent
aa07a0a6d1
commit
d3673e20b1
1 changed files with 55 additions and 55 deletions
110
Manifest.toml
110
Manifest.toml
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@ -365,9 +365,9 @@ version = "0.3.0"
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[[Compat]]
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deps = ["Dates", "LinearAlgebra", "UUIDs"]
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git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c"
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git-tree-sha1 = "886826d76ea9e72b35fcd000e535588f7b60f21d"
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||||
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
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version = "4.10.0"
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version = "4.10.1"
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[[CompilerSupportLibraries_jll]]
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deps = ["Artifacts", "Libdl"]
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@ -490,9 +490,9 @@ version = "6.130.0"
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[[DiffEqCallbacks]]
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deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
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git-tree-sha1 = "6cb07ea2557f425a5464ab1bd21c50464368c1a2"
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||||
git-tree-sha1 = "4e4de57a0ac47b2f20aae62f132355b058e9f0cd"
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uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
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version = "2.33.1"
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version = "2.34.0"
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[[DiffEqNoiseProcess]]
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deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"]
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@ -526,9 +526,9 @@ version = "3.2.3"
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[[Distances]]
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deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"]
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git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151"
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git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0"
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||||
uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
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version = "0.10.10"
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version = "0.10.11"
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[[Distributed]]
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deps = ["Random", "Serialization", "Sockets"]
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@ -563,9 +563,9 @@ version = "1.0.4"
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[[EnzymeCore]]
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deps = ["Adapt"]
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git-tree-sha1 = "ab81396e4e7b61f5590db02fa1c17fae4f16d7ab"
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git-tree-sha1 = "2efe862de93cd87f620ad6ac9c9e3f83f1b2841b"
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uuid = "f151be2c-9106-41f4-ab19-57ee4f262869"
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version = "0.6.3"
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version = "0.6.4"
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[[EpollShim_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl"]
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@ -665,10 +665,10 @@ version = "0.9.21"
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uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
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[[FillArrays]]
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deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
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git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef"
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deps = ["LinearAlgebra", "PDMats", "Random", "SparseArrays", "Statistics"]
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git-tree-sha1 = "28e4e9c4b7b162398ec8004bdabe9a90c78c122d"
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uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
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version = "1.7.0"
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version = "1.8.0"
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[[FiniteDiff]]
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deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"]
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@ -1128,9 +1128,9 @@ version = "0.4.38"
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[[JLFzf]]
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deps = ["Pipe", "REPL", "Random", "fzf_jll"]
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git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d"
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git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af"
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uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
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version = "0.1.6"
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version = "0.1.7"
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[[JLLWrappers]]
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deps = ["Artifacts", "Preferences"]
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@ -1176,9 +1176,9 @@ version = "2.1.91+0"
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[[JuliaInterpreter]]
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deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
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git-tree-sha1 = "0592b1810613d1c95eeebcd22dc11fba186c2a57"
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git-tree-sha1 = "e49bce680c109bc86e3e75ebcb15040d6ad9e1d3"
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uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
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version = "0.9.26"
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version = "0.9.27"
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[[JuliaWebAPI]]
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deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"]
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@ -1377,9 +1377,9 @@ version = "1.3.5"
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[[LightXML]]
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deps = ["Libdl", "XML2_jll"]
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git-tree-sha1 = "e129d9391168c677cd4800f5c0abb1ed8cb3794f"
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git-tree-sha1 = "3a994404d3f6709610701c7dabfc03fed87a81f8"
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uuid = "9c8b4983-aa76-5018-a973-4c85ecc9e179"
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version = "0.9.0"
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version = "0.9.1"
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[[LineSearches]]
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deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"]
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@ -1450,9 +1450,9 @@ version = "0.5.11"
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[[MakieCore]]
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deps = ["Observables", "REPL"]
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git-tree-sha1 = "9b11acd07f21c4d035bd4156e789532e8ee2cc70"
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git-tree-sha1 = "e81e6f1e8a0e96bf2bf267e4bf7f94608bf09b5c"
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uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
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version = "0.6.9"
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version = "0.7.1"
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[[ManualMemory]]
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git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd"
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@ -1476,9 +1476,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
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[[MathOptInterface]]
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deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
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git-tree-sha1 = "70ea2892b8bfffecc0387ba1a6a21192814f120c"
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git-tree-sha1 = "362ae34a5291a79e16b8eb87b5738532c5e799ff"
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uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
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version = "1.22.0"
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version = "1.23.0"
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[[MathProgBase]]
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deps = ["LinearAlgebra", "SparseArrays"]
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@ -1488,9 +1488,9 @@ version = "0.7.8"
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[[MbedTLS]]
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deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
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git-tree-sha1 = "f512dc13e64e96f703fd92ce617755ee6b5adf0f"
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git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf"
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uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
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version = "1.1.8"
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version = "1.1.9"
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[[MbedTLS_jll]]
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deps = ["Artifacts", "Libdl"]
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@ -1556,9 +1556,9 @@ version = "1.0.19"
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[[MutableArithmetics]]
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deps = ["LinearAlgebra", "SparseArrays", "Test"]
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git-tree-sha1 = "6985021d02ab8c509c841bb8b2becd3145a7b490"
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git-tree-sha1 = "806eea990fb41f9b36f1253e5697aa645bf6a9f8"
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uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
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version = "1.3.3"
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version = "1.4.0"
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[[MyterialColors]]
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git-tree-sha1 = "01d8466fb449436348999d7c6ad740f8f853a579"
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@ -1714,9 +1714,9 @@ uuid = "91d4177d-7536-5919-b921-800302f37372"
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version = "1.3.2+0"
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[[OrderedCollections]]
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git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3"
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git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5"
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uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
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version = "1.6.2"
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version = "1.6.3"
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[[OrdinaryDiffEq]]
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deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"]
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@ -1730,9 +1730,9 @@ uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15"
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[[PDMats]]
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deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
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git-tree-sha1 = "f6f85a2edb9c356b829934ad3caed2ad0ebbfc99"
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git-tree-sha1 = "4e5be6bb265d33669f98eb55d2a57addd1eeb72c"
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uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
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version = "0.11.29"
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version = "0.11.30"
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[[PGFPlots]]
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deps = ["ColorBrewer", "ColorSchemes", "Colors", "Contour", "DataFrames", "DelimitedFiles", "Discretizers", "Distributed", "ImageMagick", "Images", "Printf", "Requires", "StatsBase", "TikzPictures"]
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@ -1742,9 +1742,9 @@ version = "3.4.3"
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[[PNGFiles]]
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deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
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git-tree-sha1 = "5ded86ccaf0647349231ed6c0822c10886d4a1ee"
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git-tree-sha1 = "eed372b0fa15624273a9cdb188b1b88476e6a233"
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uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883"
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version = "0.4.1"
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version = "0.4.2"
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[[PackageExtensionCompat]]
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deps = ["Requires", "TOML"]
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@ -1841,9 +1841,9 @@ version = "0.2.1"
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[[Polynomials]]
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deps = ["LinearAlgebra", "MakieCore", "RecipesBase", "Setfield", "SparseArrays"]
|
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git-tree-sha1 = "5a95b69396b77fdb2c48970a535610c4743810e2"
|
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git-tree-sha1 = "a9c7a523d5ed375be3983db190f6a5874ae9286d"
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uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45"
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version = "4.0.5"
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version = "4.0.6"
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[[PooledArrays]]
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deps = ["DataAPI", "Future"]
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@ -1895,9 +1895,9 @@ version = "1.4.1"
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[[PrettyTables]]
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deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"]
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git-tree-sha1 = "3f43c2aae6aa4a2503b05587ab74f4f6aeff9fd0"
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git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660"
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uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
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version = "2.3.0"
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version = "2.3.1"
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[[Primes]]
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deps = ["IntegerMathUtils"]
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@ -1957,9 +1957,9 @@ version = "0.16.5"
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[[Quaternions]]
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deps = ["LinearAlgebra", "Random", "RealDot"]
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git-tree-sha1 = "da095158bdc8eaccb7890f9884048555ab771019"
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git-tree-sha1 = "9a46862d248ea548e340e30e2894118749dc7f51"
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uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0"
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version = "0.7.4"
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version = "0.7.5"
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[[REPL]]
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deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
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@ -2217,9 +2217,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
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[[SparseDiffTools]]
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deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
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git-tree-sha1 = "49068dceed7febe32afe2d7b874172a7c3198cb3"
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git-tree-sha1 = "07272c80c278947baca092df0a01da4a10622ad5"
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uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
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version = "2.12.0"
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version = "2.13.0"
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[[SparseInverseSubset]]
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deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
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@ -2258,10 +2258,10 @@ uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718"
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version = "1.4.1"
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[[StaticArrays]]
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deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"]
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git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2"
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deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore", "Statistics"]
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git-tree-sha1 = "5ef59aea6f18c25168842bded46b16662141ab87"
|
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uuid = "90137ffa-7385-5640-81b9-e52037218182"
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version = "1.6.5"
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version = "1.7.0"
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|
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[[StaticArraysCore]]
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git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d"
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@ -2322,9 +2322,9 @@ version = "1.0.1"
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[[StrideArraysCore]]
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deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"]
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git-tree-sha1 = "e7dd250422df290cee14960c1ee144b44ac3dd77"
|
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git-tree-sha1 = "d6415f66f3d89c615929af907fdc6a3e17af0d8c"
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uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da"
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version = "0.5.1"
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version = "0.5.2"
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[[StringEncodings]]
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deps = ["Libiconv_jll"]
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@ -2535,9 +2535,9 @@ version = "3.6.0"
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[[Unitful]]
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deps = ["ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "Random"]
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git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e"
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||||
git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa"
|
||||
uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
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version = "1.18.0"
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version = "1.19.0"
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[[UnitfulLatexify]]
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deps = ["LaTeXStrings", "Latexify", "Unitful"]
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@ -2558,9 +2558,9 @@ version = "0.5.5"
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[[VectorizationBase]]
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deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"]
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||||
git-tree-sha1 = "b182207d4af54ac64cbc71797765068fdeff475d"
|
||||
git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85"
|
||||
uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"
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version = "0.21.64"
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version = "0.21.65"
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[[VertexSafeGraphs]]
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deps = ["Graphs"]
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@ -2612,9 +2612,9 @@ version = "0.3.1"
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[[WoodburyMatrices]]
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deps = ["LinearAlgebra", "SparseArrays"]
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git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3"
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||||
git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062"
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uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6"
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version = "0.5.5"
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version = "0.5.6"
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[[WordTokenizers]]
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deps = ["DataDeps", "HTML_Entities", "StrTables", "Unicode"]
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@ -2635,9 +2635,9 @@ version = "0.3.1"
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[[XML2_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
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git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916"
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git-tree-sha1 = "da69178aacc095066bad1f69d2f59a60a1dd8ad1"
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uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
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version = "2.11.5+0"
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version = "2.12.0+0"
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[[XMLDict]]
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deps = ["EzXML", "IterTools", "OrderedCollections"]
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||||
|
@ -2824,10 +2824,10 @@ uuid = "700de1a5-db45-46bc-99cf-38207098b444"
|
|||
version = "0.2.4"
|
||||
|
||||
[[fzf_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
||||
git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e"
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl"]
|
||||
git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8"
|
||||
uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
|
||||
version = "0.35.1+0"
|
||||
version = "0.43.0+0"
|
||||
|
||||
[[libaom_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
||||
|
|
Loading…
Reference in a new issue