mirror of
https://github.com/MillironX/docker-BioJulia.git
synced 2024-11-21 14:36:03 +00:00
[⚡ AUTOMATED]: Pkg upgrade for 2022-04-07
Files changed:\nM Manifest.toml
This commit is contained in:
MillironX
parent
fffd8d01bf
commit
fe8b8dab5c
1 changed files with 56 additions and 56 deletions
112
Manifest.toml
112
Manifest.toml
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@ -46,9 +46,9 @@ version = "3.8.0+0"
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[[ArrayInterface]]
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deps = ["Compat", "IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"]
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git-tree-sha1 = "1ee88c4c76caa995a885dc2f22a5d548dfbbc0ba"
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git-tree-sha1 = "c933ce606f6535a7c7b98e1d86d5d1014f730596"
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uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
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version = "3.2.2"
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version = "5.0.7"
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[[ArrayLayouts]]
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deps = ["FillArrays", "LinearAlgebra", "SparseArrays"]
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@ -84,9 +84,9 @@ version = "1.0.1"
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[[AxisArrays]]
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deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"]
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git-tree-sha1 = "d127d5e4d86c7680b20c35d40b503c74b9a39b5e"
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git-tree-sha1 = "cf6875678085aed97f52bfc493baaebeb6d40bcb"
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uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9"
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version = "0.4.4"
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version = "0.4.5"
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[[BFloat16s]]
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deps = ["LinearAlgebra", "Printf", "Random", "Test"]
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@ -163,9 +163,9 @@ version = "0.1.1"
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[[CSV]]
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deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings"]
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git-tree-sha1 = "9310d9495c1eb2e4fa1955dd478660e2ecab1fbb"
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git-tree-sha1 = "873fb188a4b9d76549b81465b1f75c82aaf59238"
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uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
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version = "0.10.3"
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version = "0.10.4"
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[[CUDA]]
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deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "TimerOutputs"]
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@ -402,9 +402,9 @@ version = "0.4.0"
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[[DiffEqBase]]
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deps = ["ArrayInterface", "ChainRulesCore", "DEDataArrays", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "IterativeSolvers", "LabelledArrays", "LinearAlgebra", "Logging", "MuladdMacro", "NonlinearSolve", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "ZygoteRules"]
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git-tree-sha1 = "caada727813396d9402c26e5175a01def8fd89ce"
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git-tree-sha1 = "d1c8d8b645500d7dffec3355d29af6c4f8bfa6df"
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uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
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version = "6.82.2"
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version = "6.82.3"
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[[DiffEqCallbacks]]
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deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NLsolve", "OrdinaryDiffEq", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArrays"]
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@ -547,9 +547,9 @@ version = "3.3.10+0"
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[[FastBroadcast]]
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deps = ["LinearAlgebra", "Polyester", "Static"]
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git-tree-sha1 = "f39bcc05eb0dcbd2c0195762df7a5737041289b9"
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git-tree-sha1 = "b6bf57ec7a3f294c97ae46124705a9e6b906a209"
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uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898"
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version = "0.1.14"
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version = "0.1.15"
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[[FastClosures]]
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git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef"
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@ -591,9 +591,9 @@ version = "0.8.4"
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[[Flux]]
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deps = ["AbstractTrees", "Adapt", "ArrayInterface", "CUDA", "CodecZlib", "Colors", "DelimitedFiles", "Functors", "Juno", "LinearAlgebra", "MacroTools", "NNlib", "NNlibCUDA", "Pkg", "Printf", "Random", "Reexport", "SHA", "SparseArrays", "Statistics", "StatsBase", "Test", "ZipFile", "Zygote"]
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git-tree-sha1 = "983271b47332fd3d9488d6f2d724570290971794"
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git-tree-sha1 = "511b7c48eebb602a8f63e7d6c63e25633468dc16"
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uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c"
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version = "0.12.9"
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version = "0.12.10"
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[[Fontconfig_jll]]
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deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"]
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@ -626,10 +626,10 @@ uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7"
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version = "2.10.4+0"
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[[FreeTypeAbstraction]]
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deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics", "StaticArrays"]
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git-tree-sha1 = "8e76bcd47f98ee25c8f8be4b9a1c60f48efa4f9e"
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deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"]
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git-tree-sha1 = "b5c7fe9cea653443736d264b85466bad8c574f4a"
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uuid = "663a7486-cb36-511b-a19d-713bb74d65c9"
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version = "0.9.7"
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version = "0.9.9"
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[[FriBidi_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
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@ -665,9 +665,9 @@ version = "3.3.6+0"
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[[GLM]]
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deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "StatsModels"]
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git-tree-sha1 = "fb764dacfa30f948d52a6a4269ae293a479bbc62"
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git-tree-sha1 = "609115155b0dc532fa5130de65ed086efd27bfbd"
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uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a"
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version = "1.6.1"
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version = "1.6.2"
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[[GMP_jll]]
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deps = ["Artifacts", "Libdl"]
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@ -675,9 +675,9 @@ uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d"
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[[GPUArrays]]
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deps = ["Adapt", "LLVM", "LinearAlgebra", "Printf", "Random", "Serialization", "Statistics"]
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git-tree-sha1 = "9010083c218098a3695653773695a9949e7e8f0d"
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git-tree-sha1 = "c783e8883028bf26fb05ed4022c450ef44edd875"
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uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
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version = "8.3.1"
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version = "8.3.2"
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[[GPUCompiler]]
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deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"]
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@ -687,15 +687,15 @@ version = "0.13.14"
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[[GR]]
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deps = ["Base64", "DelimitedFiles", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Printf", "Random", "RelocatableFolders", "Serialization", "Sockets", "Test", "UUIDs"]
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git-tree-sha1 = "df5f5b0450c489fe6ed59a6c0a9804159c22684d"
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git-tree-sha1 = "af237c08bda486b74318c8070adb96efa6952530"
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uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
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version = "0.64.1"
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version = "0.64.2"
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[[GR_jll]]
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deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"]
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git-tree-sha1 = "83578392343a7885147726712523c39edc714956"
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git-tree-sha1 = "cd6efcf9dc746b06709df14e462f0a3fe0786b1e"
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uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
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version = "0.64.1+0"
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version = "0.64.2+0"
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[[GeometryBasics]]
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deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
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@ -1053,9 +1053,9 @@ version = "2.1.2+0"
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[[JuliaInterpreter]]
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deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
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git-tree-sha1 = "9c43a2eb47147a8776ca2ba489f15a9f6f2906f8"
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git-tree-sha1 = "cd6ce9cee498f6b044357cb439f2a3fea3d450df"
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uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
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version = "0.9.11"
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version = "0.9.12"
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[[JuliaWebAPI]]
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deps = ["Base64", "HTTP", "JSON", "Serialization", "Sockets", "ZMQ"]
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@ -1095,9 +1095,9 @@ version = "0.2.5"
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[[Krylov]]
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deps = ["LinearAlgebra", "Printf", "SparseArrays"]
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git-tree-sha1 = "a024280a69c49f51ba29d2deb66f07508f0b9b49"
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git-tree-sha1 = "82f5afb342a5624dc4651981584a841f6088166b"
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uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7"
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version = "0.7.13"
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version = "0.8.0"
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[[KrylovKit]]
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deps = ["LinearAlgebra", "Printf"]
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@ -1265,9 +1265,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
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[[LinearSolve]]
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deps = ["ArrayInterface", "DocStringExtensions", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "SuiteSparse", "UnPack"]
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git-tree-sha1 = "a25bc80647e44d0e1e1694b47000603497700b18"
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git-tree-sha1 = "6eb8e10ed29b85673495c29bd77ee0dfa8929977"
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uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
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version = "1.13.0"
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version = "1.15.0"
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[[LittleCMS_jll]]
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deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg"]
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@ -1286,9 +1286,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
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[[LoopVectorization]]
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deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDDualNumbers", "SLEEFPirates", "SpecialFunctions", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"]
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git-tree-sha1 = "077c7c9d746cbe30ac5f001ea4c1277f64cc5dad"
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git-tree-sha1 = "aa73a4f9379db5b4d573bce890289fb34239403d"
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uuid = "bdcacae8-1622-11e9-2a5c-532679323890"
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version = "0.12.103"
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version = "0.12.105"
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[[MKL_jll]]
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deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
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@ -1330,9 +1330,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
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[[MathOptInterface]]
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deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "JSON", "LinearAlgebra", "MutableArithmetics", "OrderedCollections", "Printf", "SparseArrays", "Test", "Unicode"]
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git-tree-sha1 = "09be99195f42c601f55317bd89f3c6bbaec227dc"
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git-tree-sha1 = "779ad2ee78c4a24383887fdba177e9e5034ce207"
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uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
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version = "1.1.1"
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version = "1.1.2"
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[[MathProgBase]]
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deps = ["LinearAlgebra", "SparseArrays"]
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@ -1568,9 +1568,9 @@ version = "1.4.1"
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[[OrdinaryDiffEq]]
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deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"]
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git-tree-sha1 = "509aa6d3b2773e5109d4a4dd9a300259ac727961"
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git-tree-sha1 = "adb3b4eec5bd0234dc55b7459d61276a870436c2"
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uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
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version = "6.7.1"
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version = "6.8.0"
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[[PCRE_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
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@ -1616,9 +1616,9 @@ version = "2.1.0"
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[[Parsers]]
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deps = ["Dates"]
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git-tree-sha1 = "85b5da0fa43588c75bb1ff986493443f821c70b7"
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git-tree-sha1 = "621f4f3b4977325b9128d5fae7a8b4829a0c2222"
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uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
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version = "2.2.3"
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version = "2.2.4"
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[[Pidfile]]
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deps = ["FileWatching", "Test"]
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@ -1643,10 +1643,10 @@ uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688"
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version = "0.1.1"
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[[PlotThemes]]
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deps = ["PlotUtils", "Requires", "Statistics"]
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git-tree-sha1 = "a3a964ce9dc7898193536002a6dd892b1b5a6f1d"
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deps = ["PlotUtils", "Statistics"]
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git-tree-sha1 = "8162b2f8547bc23876edd0c5181b27702ae58dce"
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uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a"
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version = "2.0.1"
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version = "3.0.0"
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[[PlotUtils]]
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deps = ["ColorSchemes", "Colors", "Dates", "Printf", "Random", "Reexport", "Statistics"]
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@ -1656,9 +1656,9 @@ version = "1.2.0"
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[[Plots]]
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deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"]
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git-tree-sha1 = "edec0846433f1c1941032385588fd57380b62b59"
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git-tree-sha1 = "88ee01b02fba3c771ac4dce0dfc4ecf0cb6fb772"
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uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
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version = "1.27.4"
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version = "1.27.5"
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[[PoissonRandom]]
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deps = ["Random", "Statistics", "Test"]
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@ -1772,9 +1772,9 @@ version = "0.16.3"
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[[Quaternions]]
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deps = ["DualNumbers", "LinearAlgebra", "Random"]
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git-tree-sha1 = "522770af103809e8346aefa4b25c31fbec377ccf"
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git-tree-sha1 = "3754f35199da1bb4a55211ddbfd64cb1efee2272"
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uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0"
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version = "0.5.3"
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version = "0.5.4"
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[[REPL]]
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deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
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@ -1879,9 +1879,9 @@ version = "0.3.0+0"
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[[Roots]]
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deps = ["CommonSolve", "Printf", "Setfield"]
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git-tree-sha1 = "6085b8ac184add45b586ed8d74468310948dcfe8"
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git-tree-sha1 = "838b60ee62bebc794864c880a47e331e00c47505"
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uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
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version = "1.4.0"
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version = "1.4.1"
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[[Rotations]]
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deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays", "Statistics"]
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@ -2008,9 +2008,9 @@ version = "0.1.1"
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[[Static]]
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deps = ["IfElse"]
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git-tree-sha1 = "7f5a513baec6f122401abfc8e9c074fdac54f6c1"
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git-tree-sha1 = "87e9954dfa33fd145694e42337bdd3d5b07021a6"
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uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
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version = "0.4.1"
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version = "0.6.0"
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[[StaticArrays]]
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deps = ["LinearAlgebra", "Random", "Statistics"]
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@ -2036,9 +2036,9 @@ version = "0.33.16"
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[[StatsFuns]]
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deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
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git-tree-sha1 = "25405d7016a47cf2bd6cd91e66f4de437fd54a07"
|
||||
git-tree-sha1 = "72e6abd6fc9ef0fa62a159713c83b7637a14b2b8"
|
||||
uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
|
||||
version = "0.9.16"
|
||||
version = "0.9.17"
|
||||
|
||||
[[StatsModels]]
|
||||
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsBase", "StatsFuns", "Tables"]
|
||||
|
|
@ -2066,9 +2066,9 @@ version = "6.46.0"
|
|||
|
||||
[[StrideArraysCore]]
|
||||
deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "Requires", "SIMDTypes", "Static", "ThreadingUtilities"]
|
||||
git-tree-sha1 = "28debdcb4371020f89ffce06af4f7f68905a5fec"
|
||||
git-tree-sha1 = "c7e0392560f15771003cce388fe8471d17941374"
|
||||
uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da"
|
||||
version = "0.2.15"
|
||||
version = "0.2.19"
|
||||
|
||||
[[StringEncodings]]
|
||||
deps = ["Libiconv_jll"]
|
||||
|
|
@ -2217,9 +2217,9 @@ version = "0.4.1"
|
|||
|
||||
[[UnicodePlots]]
|
||||
deps = ["ColorTypes", "Contour", "Crayons", "Dates", "FileIO", "FreeTypeAbstraction", "LinearAlgebra", "MarchingCubes", "NaNMath", "SparseArrays", "StaticArrays", "StatsBase", "Unitful"]
|
||||
git-tree-sha1 = "e7b68f6d25a79dff79acbd3bcf324db4385c2c6f"
|
||||
git-tree-sha1 = "c3bab41f0910b8e3e70d88ee24a68ab952ec0a76"
|
||||
uuid = "b8865327-cd53-5732-bb35-84acbb429228"
|
||||
version = "2.10.1"
|
||||
version = "2.10.3"
|
||||
|
||||
[[Unitful]]
|
||||
deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"]
|
||||
|
|
@ -2234,9 +2234,9 @@ version = "0.1.2"
|
|||
|
||||
[[VectorizationBase]]
|
||||
deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "Hwloc", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"]
|
||||
git-tree-sha1 = "a48484def839a98571683a8b5b942fc910329480"
|
||||
git-tree-sha1 = "460aacceb20a12ec187eb8ca183c5944dc6c99c4"
|
||||
uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"
|
||||
version = "0.21.26"
|
||||
version = "0.21.28"
|
||||
|
||||
[[VertexSafeGraphs]]
|
||||
deps = ["Graphs"]
|
||||
|
|
|
|||
Loading…
Reference in a new issue