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BioJulia in a Docker image

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Thomas A. Christensen II 3eff3e4cc7 Rebrand to BioJulia Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>		2022-03-31 10:04:17 -05:00
.github/workflows	Rebrand to BioJulia	2022-03-31 10:04:17 -05:00
Dockerfile	Add Dockerfile	2022-03-30 17:22:55 -05:00
LICENSE	Add LICENSE	2022-03-30 17:26:43 -05:00
Manifest.toml	Add package dependencies for Julia	2022-03-30 17:21:59 -05:00
Project.toml	Add package dependencies for Julia	2022-03-30 17:21:59 -05:00
README.md	Rebrand to BioJulia	2022-03-31 10:04:17 -05:00

README.md

BioJulia Docker Image

Most of the BioJulia ecosystem made available as a single ready-made Docker image. Built on top of my JuliaPro image.

Usage

The image is hosted on Docker Hub, Quay, and the GitHub Container Registry, and is compatible with Docker, Podman, and Singularity/Apptainer, and probably others.

docker pull millironx/biojulia:latest
podman pull quay.io/millironx/biojulia:latest
singularity pull docker://ghcr.io/millironx/biojulia:latest

The packages are installed in a depot in /usr/local/share/julia, so keep this in mind when overwriting the JULIA_DEPOT_PATH variable. For more information on the rationale for this and examples, see

nf-core tools discussion: https://github.com/nf-core/tools/pull/1317
Alex Peltzer's blog: https://apeltzer.github.io/post/03-julia-lang-nextflow

Included Packages

Everything from my JuliaPro image, plus

README.md

BioJulia Docker Image

Usage

Included Packages

Programming Libraries

Biological Types

File Formats

Analyses

Compression Codecs and File Processing

Data Storage and Retrieval