mirror of
https://github.com/MillironX/dotfiles.git
synced 2024-11-21 13:16:04 +00:00
Add mamba to Nextflow config
This commit is contained in:
parent
0c81dcaff9
commit
e349d9968f
1 changed files with 2 additions and 94 deletions
|
@ -4,99 +4,7 @@ tower {
|
|||
accessToken = '{{ (bitwarden "item" "d41ac952-d8b5-4d20-a42a-ad8e0174d152").login.password }}'
|
||||
}
|
||||
{{ end }}
|
||||
profiles {
|
||||
aahz {
|
||||
params {
|
||||
config_profile_description = 'KSU VDL Molecular NGS Big Server profile'
|
||||
config_profile_contact = 'Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>'
|
||||
config_profile_url = null
|
||||
|
||||
max_memory = 745.GB
|
||||
max_cpus = 78
|
||||
max_time = 7.d
|
||||
}
|
||||
singularity {
|
||||
enabled = true
|
||||
autoMounts = true
|
||||
envWhitelist = 'NCBI_API_KEY'
|
||||
}
|
||||
process {
|
||||
executor = 'local'
|
||||
}
|
||||
}
|
||||
atlas {
|
||||
params {
|
||||
config_profile_description = 'Mississippi State University Atlas Cluster profile'
|
||||
config_profile_contact = 'Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>'
|
||||
config_profile_url = 'https://www.hpc.msstate.edu/computing/atlas/'
|
||||
|
||||
max_memory = 1539.GB
|
||||
max_cpus = 24
|
||||
max_time = 14.d
|
||||
}
|
||||
singularity {
|
||||
enabled = true
|
||||
autoMounts = true
|
||||
envWhitelist = 'NCBI_API_KEY'
|
||||
}
|
||||
process {
|
||||
scratch = true
|
||||
executor = 'slurm'
|
||||
clusterOptions = '--account=fabadru'
|
||||
|
||||
withLabel: process_high_memory {
|
||||
queue = 'bigmem'
|
||||
}
|
||||
}
|
||||
}
|
||||
ceres {
|
||||
params {
|
||||
config_profile_description = 'USDA ARS SCInet Ceres Cluster profile'
|
||||
config_profile_contact = 'Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>'
|
||||
config_profile_url = 'https://scinet.usda.gov/guide/ceres/#partitions-or-queues'
|
||||
|
||||
max_memory = 768.GB
|
||||
max_cpus = 40
|
||||
max_time = 1000.h
|
||||
}
|
||||
singularity {
|
||||
enabled = true
|
||||
autoMounts = true
|
||||
envWhitelist = 'NCBI_API_KEY'
|
||||
}
|
||||
process {
|
||||
scratch = true
|
||||
executor = 'slurm'
|
||||
queue = 'short'
|
||||
|
||||
withLabel: process_high_memory {
|
||||
queue = 'mem'
|
||||
}
|
||||
withLabel: process_long {
|
||||
queue = 'long'
|
||||
}
|
||||
withLabel: process_medium {
|
||||
queue = 'medium'
|
||||
}
|
||||
}
|
||||
}
|
||||
tananda {
|
||||
params {
|
||||
config_profile_description = 'KSU VDL Molecular NGS Desktop profile'
|
||||
config_profile_contact = 'Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>'
|
||||
config_profile_url = null
|
||||
|
||||
max_memory = 14.GB
|
||||
max_cpus = 12
|
||||
max_time = 4.h
|
||||
}
|
||||
docker {
|
||||
enabled = true
|
||||
userEmulation = true
|
||||
envWhitelist = 'NCBI_API_KEY'
|
||||
}
|
||||
process {
|
||||
executor = 'local'
|
||||
}
|
||||
}
|
||||
conda {
|
||||
useMamba = true
|
||||
}
|
||||
|
|
Loading…
Reference in a new issue