2023-06-08 22:55:57 +00:00
|
|
|
process {
|
|
|
|
|
errorStrategy = 'finish'
|
|
|
|
|
time = '7d'
|
2023-09-23 21:24:57 +00:00
|
|
|
|
|
|
|
|
withName: 'HAPLINK_ML_HAPLOTYPES' {
|
|
|
|
|
ext.ml_args = """
|
|
|
|
|
--simulated-reads \\
|
|
|
|
|
--overlap-min 20 \\
|
|
|
|
|
--overlap-max 8000 \\
|
|
|
|
|
"""
|
|
|
|
|
}
|
2023-06-08 22:55:57 +00:00
|
|
|
}
|
2023-08-19 19:36:51 +00:00
|
|
|
|
|
|
|
|
singularity.enabled = true
|
|
|
|
|
|
|
|
|
|
env {
|
|
|
|
|
R_PROFILE_USER = "/.Rprofile"
|
|
|
|
|
R_ENVIRON_USER = "/.Renviron"
|
|
|
|
|
}
|
