haplotyper-battle-royale/modules/efetch/main.nf

process EFETCH {
    label 'process_single'

    container 'quay.io/biocontainers/entrez-direct:16.2--he881be0_1'

    publishDir "results", mode: 'copy'

    output:
    path 'idv4.fasta'

    script:
    """
    esearch \\
            -db nucleotide \\
            -query "NC_036618.1" \\
        | efetch \\
            -format fasta \\
        > idv4.fasta
    """
}