28 lines
595 B
Text
28 lines
595 B
Text
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process NANOFILT {
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cpus 1
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memory '8.GB'
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container 'quay.io/biocontainers/nanofilt:2.8.0--py_0'
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input:
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tuple val(prefix), path(reads)
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output:
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tuple val(prefix), path("*_trimmed.fastq.gz")
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script:
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"""
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gzip \\
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-cdf "${reads}" \\
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| NanoFilt \\
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--logfile "trimmed/${prefix}.nanofilt.log" \\
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--length 100 \\
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--quality 7 \\
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--headcrop 30 \\
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--tailcrop 30 \\
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--minGC 0.1 \\
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--maxGC 0.9 \\
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| gzip \\
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> "${prefix}_trimmed.fastq.gz"
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"""
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}
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