millironx/haplotyper-battle-royale
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refactor: Change output directory to match haplotypes

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This commit is contained in:
Thomas A. Christensen II 2023-09-23 16:30:24 -05:00
parent 4751203579
commit 002bd44975
Signed by: millironx
GPG key ID: 09335146883990B9
2 changed files with 3 additions and 3 deletions
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4
main.nf
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@ -49,7 +49,7 @@ workflow {
)
HAPLINK_RAW_HAPLOTYPES
.out
.map{ [ it[0], 'raw', it[1] ] }
.map{ [ it[0], 'HAPLINK_RAW_HAPLOTYPES', it[1] ] }
.set{ ch_raw_haplotypes }
HAPLINK_ML_HAPLOTYPES(
@ -58,7 +58,7 @@ workflow {
)
HAPLINK_ML_HAPLOTYPES
.out
.map{ [ it[0], 'ml', it[1] ] }
.map{ [ it[0], 'HAPLINK_ML_HAPLOTYPES', it[1] ] }
.set{ ch_ml_haplotypes }
ch_raw_haplotypes

2
modules/haplink/sequences/main.nf
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@ -11,7 +11,7 @@ process HAPLINK_SEQUENCES {
output:
tuple val(prefix), val(method), path("*.fasta")
publishDir "results/${method}-haplotypes", mode: 'copy'
publishDir "results/${method}", mode: 'copy'
script:
"""