feat: Add SHORAH processes to pipeline

2023-09-25 18:51:58 -05:00 · 2023-09-25 18:51:58 -05:00 · 355ce9a00a
commit 355ce9a00a
parent 444001b499
1 changed files with 10 additions and 0 deletions
--- a/main.nf
+++ b/main.nf
@ -85,6 +85,16 @@ workflow {

    QUASIRECOMB( ch_alignments )

+    SHORAH_AMPLICON(
+        ch_alignments,
+        ch_reference
+    )
+
+    SHORAH_SHOTGUN(
+        ch_alignments,
+        ch_reference
+    )
+
    VIQUAS(
        ch_alignments,
        ch_reference