feat: Add SHORAH processes to pipeline
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main.nf
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main.nf
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@ -85,6 +85,16 @@ workflow {
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QUASIRECOMB( ch_alignments )
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QUASIRECOMB( ch_alignments )
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SHORAH_AMPLICON(
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ch_alignments,
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ch_reference
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)
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SHORAH_SHOTGUN(
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ch_alignments,
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ch_reference
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)
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VIQUAS(
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VIQUAS(
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ch_alignments,
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ch_alignments,
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ch_reference
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ch_reference
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