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fix: Use GitHub containers registry for HapLink modules

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There are still issues with using the Biocontainers build of HapLink within
certain container platforms (cough, Singularity). Use the more exotic, but
more stable, one directly from the lab.
This commit is contained in:
Thomas A. Christensen II 2023-09-30 16:01:09 -05:00
parent 2f96ba4e44
commit 38d779b1dc
Signed by: millironx
GPG key ID: 09335146883990B9
3 changed files with 3 additions and 3 deletions
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2
modules/haplink/haplotypes/main.nf
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@ -3,7 +3,7 @@ process HAPLINK_HAPLOTYPES {
label 'process_high' label 'process_high'
label 'haplink' label 'haplink'
container 'quay.io/biocontainers/haplink:1.0.0--h031d066_0' container 'ghcr.io/ksumngs/haplink.jl:1.0.0'
input: input:
tuple val(prefix), path(bam), path(bai), path(vcf) tuple val(prefix), path(bam), path(bai), path(vcf)

2
modules/haplink/sequences/main.nf
View file

@ -3,7 +3,7 @@ process HAPLINK_SEQUENCES {
label 'process_single' label 'process_single'
label 'haplink' label 'haplink'
container 'quay.io/biocontainers/haplink:1.0.0--h031d066_0' container 'ghcr.io/ksumngs/haplink.jl:1.0.0'
input: input:
tuple val(prefix), val(method), path(yaml) tuple val(prefix), val(method), path(yaml)

2
modules/haplink/variants/main.nf
View file

@ -3,7 +3,7 @@ process HAPLINK_VARIANTS {
label 'process_medium' label 'process_medium'
label 'haplink' label 'haplink'
container 'quay.io/biocontainers/haplink:1.0.0--h031d066_0' container 'ghcr.io/ksumngs/haplink.jl:1.0.0'
input: input:
tuple val(prefix), path(bam), path(bai) tuple val(prefix), path(bam), path(bai)