millironx/haplotyper-battle-royale
1
0
Fork 0
Code Issues Pull requests Releases Packages Activity

feat: Add CliqueSNV haplotype calling to pipeline

Browse source
This commit is contained in:
Thomas A. Christensen II 2023-09-23 16:43:02 -05:00
parent de853c2d22
commit 5ab64a8fea
Signed by: millironx
GPG key ID: 09335146883990B9
1 changed files with 6 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
main.nf
View file

@ -1,5 +1,6 @@
#!/usr/bin/env nextflow #!/usr/bin/env nextflow
include { CLIQUESNV } from './modules/cliquesnv'
include { EFETCH } from './modules/efetch' include { EFETCH } from './modules/efetch'
include { HAPLINK_HAPLOTYPES as HAPLINK_ML_HAPLOTYPES } from './modules/haplink/haplotypes' include { HAPLINK_HAPLOTYPES as HAPLINK_ML_HAPLOTYPES } from './modules/haplink/haplotypes'
include { HAPLINK_HAPLOTYPES as HAPLINK_RAW_HAPLOTYPES } from './modules/haplink/haplotypes' include { HAPLINK_HAPLOTYPES as HAPLINK_RAW_HAPLOTYPES } from './modules/haplink/haplotypes'
@ -74,4 +75,9 @@ workflow {
ch_alignments, ch_alignments,
ch_reference ch_reference
) )
CLIQUESNV(
ch_alignments,
'snv-pacbio'
)
} }