feat: Add CliqueSNV haplotype calling to pipeline
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1 changed files with 6 additions and 0 deletions
6
main.nf
6
main.nf
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@ -1,5 +1,6 @@
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#!/usr/bin/env nextflow
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#!/usr/bin/env nextflow
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include { CLIQUESNV } from './modules/cliquesnv'
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include { EFETCH } from './modules/efetch'
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include { EFETCH } from './modules/efetch'
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include { HAPLINK_HAPLOTYPES as HAPLINK_ML_HAPLOTYPES } from './modules/haplink/haplotypes'
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include { HAPLINK_HAPLOTYPES as HAPLINK_ML_HAPLOTYPES } from './modules/haplink/haplotypes'
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include { HAPLINK_HAPLOTYPES as HAPLINK_RAW_HAPLOTYPES } from './modules/haplink/haplotypes'
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include { HAPLINK_HAPLOTYPES as HAPLINK_RAW_HAPLOTYPES } from './modules/haplink/haplotypes'
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@ -74,4 +75,9 @@ workflow {
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ch_alignments,
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ch_alignments,
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ch_reference
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ch_reference
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)
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)
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CLIQUESNV(
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ch_alignments,
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'snv-pacbio'
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)
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}
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}
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