feat: Add PREDICTHAPLO to pipeline
This commit is contained in:
parent
029f3a5126
commit
5cc8867799
1 changed files with 6 additions and 0 deletions
6
main.nf
6
main.nf
|
@ -6,6 +6,7 @@ include { HAPLINK_HAPLOTYPES as HAPLINK_ML_HAPLOTYPES } from './modules/haplink/
|
||||||
include { HAPLINK_HAPLOTYPES as HAPLINK_RAW_HAPLOTYPES } from './modules/haplink/haplotypes'
|
include { HAPLINK_HAPLOTYPES as HAPLINK_RAW_HAPLOTYPES } from './modules/haplink/haplotypes'
|
||||||
include { HAPLINK_SEQUENCES } from './modules/haplink/sequences'
|
include { HAPLINK_SEQUENCES } from './modules/haplink/sequences'
|
||||||
include { HAPLINK_VARIANTS } from './modules/haplink/variants'
|
include { HAPLINK_VARIANTS } from './modules/haplink/variants'
|
||||||
|
include { PREDICTHAPLO } from './modules/predicthaplo'
|
||||||
include { MINIMAP2 } from './modules/minimap2'
|
include { MINIMAP2 } from './modules/minimap2'
|
||||||
include { NANOFILT } form './modules/nanofilt'
|
include { NANOFILT } form './modules/nanofilt'
|
||||||
include { SHORAH_AMPLICON } from './modules/shorah/amplicon'
|
include { SHORAH_AMPLICON } from './modules/shorah/amplicon'
|
||||||
|
@ -76,6 +77,11 @@ workflow {
|
||||||
ch_reference
|
ch_reference
|
||||||
)
|
)
|
||||||
|
|
||||||
|
PREDICTHAPLO(
|
||||||
|
ch_alignments,
|
||||||
|
ch_reference
|
||||||
|
)
|
||||||
|
|
||||||
VIQUAS(
|
VIQUAS(
|
||||||
ch_alignments,
|
ch_alignments,
|
||||||
ch_reference
|
ch_reference
|
||||||
|
|
Loading…
Reference in a new issue