feat: Add PREDICTHAPLO to pipeline

main.nf

@@ -6,6 +6,7 @@ include { HAPLINK_HAPLOTYPES as HAPLINK_ML_HAPLOTYPES } from './modules/haplink/
 include { HAPLINK_HAPLOTYPES as HAPLINK_RAW_HAPLOTYPES } from './modules/haplink/haplotypes'
 include { HAPLINK_SEQUENCES } from './modules/haplink/sequences'
 include { HAPLINK_VARIANTS } from './modules/haplink/variants'
+include { PREDICTHAPLO } from './modules/predicthaplo'
 include { MINIMAP2 } from './modules/minimap2'
 include { NANOFILT } form './modules/nanofilt'
 include { SHORAH_AMPLICON } from './modules/shorah/amplicon'
@@ -76,6 +77,11 @@ workflow {
         ch_reference
     )
 
+    PREDICTHAPLO(
+        ch_alignments,
+        ch_reference
+    )
+
     VIQUAS(
         ch_alignments,
         ch_reference