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feat: Add ViQuas to main pipeline

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This commit is contained in:
Thomas A. Christensen II 2023-08-09 16:09:55 -05:00
parent 1e20488409
commit 9198d1186c
Signed by: millironx
GPG key ID: 09335146883990B9
1 changed files with 7 additions and 0 deletions
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7
main.nf
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@ -1,5 +1,7 @@
#!/usr/bin/env nextflow #!/usr/bin/env nextflow
include { VIQUAS } from './modules/viquas'
workflow { workflow {
Channel Channel
@ -58,6 +60,11 @@ workflow {
ch_all_haplotypes, ch_all_haplotypes,
ch_reference ch_reference
) )
VIQUAS(
ch_alignments,
ch_reference
)
} }
process EFETCH { process EFETCH {