41ac5852be
feat: Add parameters for input and output directories
2023-10-18 21:08:40 -05:00
21ef25be43
feat: Add nf-validation plugin
2023-10-18 21:06:48 -05:00
2f96ba4e44
feat!: Remove PREDICTHAPLO module
...
The developers no longer publish a single-end version of predicthaplo (see
https://github.com/cbg-ethz/PredictHaplo/issues/1 ). Since this pipeline is
targeting single-end read technologies, drop predicthaplo from the list.
2023-09-30 15:11:52 -05:00
b98a797701
feat: Add control flow for choosing haplotypers
2023-09-26 08:49:57 -05:00
96471746b9
feat: Replace hard-coded singularity with profile-based containers
2023-09-26 08:49:20 -05:00
7f43f0282f
feat: Add nf-core resource allocation parameters
2023-09-26 08:49:17 -05:00
137804518f
feat: Add nf-core config parameters
2023-09-26 08:49:16 -05:00
52ca8f1528
refactor: Replace in-workflow HAPLINK processes with imported modules
2023-09-26 08:49:06 -05:00
a91632a883
feat: Force containerized R environments
2023-08-19 14:36:51 -05:00
7743bf31c6
feat: Import HapLink validation script
2023-06-08 17:55:57 -05:00
