16 commits

Author	SHA1	Message	Date
Thomas A. Christensen II	d8fee48c28	feat: Add CliqueSNV to pipeline	2023-09-26 08:49:22 -05:00
Thomas A. Christensen II	5ab64a8fea	feat: Add CliqueSNV haplotype calling to pipeline	2023-09-26 08:49:13 -05:00
Thomas A. Christensen II	002bd44975	refactor: Change output directory to match haplotypes	2023-09-26 08:49:10 -05:00
Thomas A. Christensen II	5162f649d8	refactor: Move HAPLINK_SEQUENCES module to its own file	2023-09-26 08:49:07 -05:00
Thomas A. Christensen II	52ca8f1528	refactor: Replace in-workflow HAPLINK processes with imported modules	2023-09-26 08:49:06 -05:00
Thomas A. Christensen II	db0255c54a	refactor: Move SHORAH_SHOTGUN to its own file	2023-09-26 08:49:02 -05:00
Thomas A. Christensen II	dbea6fb30a	refactor: Move SHORAH_AMPLICON to its own file	2023-09-23 16:09:21 -05:00
Thomas A. Christensen II	a9aa590f00	refactor: Move MINIMAP2 module to separate file	2023-09-23 16:05:02 -05:00
Thomas A. Christensen II	f157b0395e	refactor: Move NANOFILT module to its own file	2023-09-23 15:44:08 -05:00
Thomas A. Christensen II	b1ee784dac	refactor: Make reference genome an input for EFETCH	2023-09-23 15:38:55 -05:00
Thomas A. Christensen II	18875ae1a6	refactor: Move EFETCH module to its own file	2023-09-23 15:34:27 -05:00
Thomas A. Christensen II	2829d51533	refactor: Move HAPLINK_VARIANTS module to its own folder	2023-09-23 15:21:26 -05:00
Thomas A. Christensen II	9198d1186c	feat: Add ViQuas to main pipeline	2023-08-09 16:09:55 -05:00
Thomas A. Christensen II	ad10d46c87	feat: Add SHORAH_SHOTGUN process	2023-06-08 18:12:23 -05:00
Thomas A. Christensen II	feb051fc07	feat: Add SHORAH_AMPLICON process	2023-06-08 18:11:33 -05:00
Thomas A. Christensen II	7743bf31c6	feat: Import HapLink validation script	2023-06-08 17:55:57 -05:00