23 lines
453 B
Text
23 lines
453 B
Text
process PREDICTHAPLO {
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tag "${prefix}"
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label 'process_high'
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container 'quay.io/biocontainers/predicthaplo:2.1.4--h9b88814_5'
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input:
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tuple val(prefix), path(bam)
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path(reference)
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output:
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tuple val(prefix), path("*.fa*")
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publishDir "results/${task.process}", mode: 'copy'
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script:
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"""
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predicthaplo \\
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--sam "${bam}" \\
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--reference "${reference}" \\
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--prefix "${prefix}"
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"""
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}
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