23 lines
397 B
Text
23 lines
397 B
Text
process EFETCH {
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label 'process_single'
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container 'quay.io/biocontainers/entrez-direct:16.2--he881be0_1'
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input:
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val(genome)
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publishDir "results", mode: 'copy'
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output:
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path 'idv4.fasta'
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script:
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"""
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esearch \\
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-db nucleotide \\
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-query "${genome}" \\
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| efetch \\
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-format fasta \\
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> idv4.fasta
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"""
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}
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