26 lines
478 B
Text
26 lines
478 B
Text
process VIQUAS {
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tag "${prefix}"
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label 'process_high'
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label 'viquas'
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container 'code.millironx.com/millironx/haplotyper-battle-royale:viquas'
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input:
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tuple val(prefix), path(bam), path(bai)
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path(reference)
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output:
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tuple val(prefix), path("*.fa")
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publishDir "results/${task.process}", mode: 'copy'
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when:
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task.ext.when == null || task.ext.when
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script:
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"""
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viquas \\
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${reference} \\
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${bam}
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"""
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}
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