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27 lines
638 B
Text
27 lines
638 B
Text
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singularityDir = "/gpfs/scratch/${USER}/singularity_images_nextflow"
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//Profile config names for nf-core/configs
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params {
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config_profile_description = 'Computerome 2.0 cluster profile provided by nf-core/configs.'
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config_profile_contact = 'Marc Trunjer Kusk Nielsen (@marcmtk)'
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config_profile_url = 'https://www.computerome.dk/'
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}
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singularity {
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enabled = true
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autoMounts = true
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cacheDir = singularityDir
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}
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process {
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beforeScript = 'module load singularity squashfs-tools'
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executor = 'pbs'
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queue = { task.memory >= 192.GB ? 'fatnode': 'thinnode'}
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}
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params {
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max_memory = 1500.GB
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max_cpus = 40
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max_time = 168.h
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}
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