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Create computerome.config

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Marc Trunjer Kusk Nielsen 2021-08-31 13:58:39 +02:00 committed by GitHub
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singularityDir = "/gpfs/scratch/${USER}/singularity_images_nextflow"
//Profile config names for nf-core/configs
params {
config_profile_description = 'Computerome 2.0 cluster profile provided by nf-core/configs.'
config_profile_contact = 'Marc Trunjer Kusk Nielsen (@marcmtk)'
config_profile_url = 'https://www.computerome.dk/'
}
singularity {
enabled = true
autoMounts = true
cacheDir = singularityDir
}
process {
beforeScript = 'module load singularity squashfs-tools'
executor = 'pbs'
queue = { task.memory >= 192.GB ? 'fatnode': 'thinnode'}
}
params {
max_memory = 1500.GB
max_cpus = 40
max_time = 168.h
}