2021-11-18 20:51:39 +00:00
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//Nextflow config file for running on Azure batch
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params {
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config_profile_description = 'AWSBATCH Cloud Profile'
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config_profile_contact = 'Venkat Malladi (@vsmalladi)'
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config_profile_url = 'https://azure.microsoft.com/services/batch/'
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2021-11-18 21:28:34 +00:00
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az_location = 'westus2'
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2021-11-18 20:51:39 +00:00
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batch_name = false
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batch_key = false
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2021-11-18 21:47:27 +00:00
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storage_name = 'platinumgenomes'
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2021-11-18 21:28:34 +00:00
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sas_token = 'sv=2019-02-02&se=2050-01-01T08%3A00%3A00Z&si=prod&sr=c&sig=FFfZ0QaDcnEPQmWsshtpoYOjbzd4jtwIWeK%2Fc4i9MqM%3D'
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2021-11-18 21:47:27 +00:00
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work_dir = false
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2021-11-18 20:51:39 +00:00
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}
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docker {
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enabled = true
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}
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azure.batch.location = params.az_location
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azure.batch.accountName = params.batch_name
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azure.batch.accountKey = params.batch_key
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azure.batch.autoPoolMode = true
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azure.storage.accountName = params.storage_name
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2021-11-18 21:28:34 +00:00
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azure.storage.sasToken = params.sas_token
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2021-11-18 20:51:39 +00:00
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process.executor = 'azurebatch'
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2021-11-18 21:51:12 +00:00
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workDir = params.work_dir
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