nf-configs/conf/uppmax.config

//Profile config names for nf-core/configs
params {
  config_profile_name = 'UPPMAX'
  config_profile_description = 'Swedish UPPMAX cluster profile provided by nf-core/configs.'
  config_profile_contact = 'Phil Ewels (@ewels)'
  config_profile_url = 'https://www.uppmax.uu.se/'
}

singularity {
  enabled = true
}

process {
  executor = 'slurm'
  clusterOptions = { "-A $params.project ${params.clusterOptions ?: ''}" }
}

params {
  saveReference = true

  max_memory = 128.GB
  max_cpus = 16
  max_time = 240.h
  // illumina iGenomes reference file paths on UPPMAX
  igenomes_base = '/sw/data/uppnex/igenomes/'
}