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nf-configs/conf/hasta.config

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// Profile config names for nf-core/configs
params {
config_profile_description = 'Hasta, a local cluster setup at Clinical Genomics, Stockholm.'
config_profile_contact = 'Clinical Genomics, Stockholm'
config_profile_url = 'https://github.com/Clinical-Genomics'
priority = null
clusterOptions = null
schema_ignore_params = "priority,clusterOptions"
}
singularity {
enabled = true
envWhitelist = ['_JAVA_OPTIONS']
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}
params {
max_memory = 180.GB
max_cpus = 36
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max_time = 336.h
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}
process {
executor = 'slurm'
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clusterOptions = { "-A $params.priority ${params.clusterOptions ?: ''}" }
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}
profiles {
dev_prio {
params {
priority = 'development'
clusterOptions = "--qos=low"
}
}
prod_prio {
params {
priority = 'production'
clusterOptions = "--qos=low"
}
}
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}