2019-01-04 13:55:22 +00:00
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//Profile config names for nf-core/configs
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params {
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2020-05-26 09:07:06 +00:00
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config_profile_description = 'Generic MPI-SHH cluster(s) profile provided by nf-core/configs.'
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2019-11-26 14:26:05 +00:00
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config_profile_contact = 'James Fellows Yates (@jfy133), Maxime Borry (@Maxibor)'
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2019-04-25 13:50:48 +00:00
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config_profile_url = 'https://shh.mpg.de'
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2020-05-12 10:47:25 +00:00
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max_memory = 256.GB
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max_cpus = 32
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max_time = 720.h
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//Illumina iGenomes reference file path
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igenomes_base = "/projects1/public_data/igenomes/"
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2019-01-04 13:55:22 +00:00
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}
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2019-01-03 15:01:06 +00:00
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2020-03-03 15:47:49 +00:00
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cleanup = true
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2019-01-03 15:01:06 +00:00
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singularity {
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enabled = true
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2019-04-25 13:48:20 +00:00
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autoMounts = true
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2019-03-14 20:16:02 +00:00
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cacheDir = "/projects1/singularity_scratch/cache/"
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2019-01-03 15:01:06 +00:00
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}
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process {
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executor = 'slurm'
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2019-06-14 17:16:20 +00:00
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}
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executor {
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2020-09-29 12:03:35 +00:00
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queueSize = 8
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2019-01-03 15:01:06 +00:00
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}
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2019-12-05 11:09:11 +00:00
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profiles {
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cdag {
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2020-05-12 10:42:42 +00:00
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params {
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2020-05-26 09:07:06 +00:00
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config_profile_description = 'CDAG MPI-SHH profile, provided by nf-core/configs.'
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2020-05-12 10:42:42 +00:00
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}
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2020-07-23 13:38:28 +00:00
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// delete when CDAG will be fixed
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process {
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queue = 'long'
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}
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2019-12-05 11:09:11 +00:00
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}
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sdag {
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2020-05-12 10:42:42 +00:00
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params {
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2020-11-18 12:04:46 +00:00
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config_profile_description = 'SDAG MPI-SHH profile, provided by nf-core/configs.'
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max_memory = 2.TB
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max_cpus = 128
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}
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process {
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queue = { task.memory > 756.GB || task.cpus > 64 ? 'supercruncher': task.time <= 2.h ? 'short' : task.time <= 48.h ? 'medium': 'long' }
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2020-05-12 10:42:42 +00:00
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}
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2019-12-05 11:09:11 +00:00
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}
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2019-12-05 11:23:06 +00:00
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}
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