2019-01-04 13:55:22 +00:00
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//Profile config names for nf-core/configs
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params {
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2019-01-07 13:25:06 +00:00
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config_profile_description = 'QBiC Core Facility cluster profile provided by nf-core/configs.'
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2020-03-23 16:16:34 +00:00
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config_profile_contact = 'Gisela Gabernet (@ggabernet)'
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2019-01-04 13:55:22 +00:00
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config_profile_url = 'http://qbic.uni-tuebingen.de/'
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}
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2018-11-23 15:56:34 +00:00
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singularity {
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2018-11-26 16:32:06 +00:00
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enabled = true
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2019-10-08 11:20:58 +00:00
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cacheDir = '/nfsmounts/container'
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2018-11-23 15:56:34 +00:00
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}
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process {
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2019-11-08 09:06:23 +00:00
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beforeScript = 'module load devel/singularity/3.4.2'
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2018-11-26 16:32:06 +00:00
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executor = 'slurm'
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2020-03-06 09:46:37 +00:00
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queue = { task.memory > 60.GB || task.cpus > 20 ? 'qbic' : 'compute' }
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2018-11-23 15:56:34 +00:00
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}
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2019-07-03 07:21:16 +00:00
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weblog{
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enabled = true
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2019-10-10 10:56:39 +00:00
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url = 'https://services.qbic.uni-tuebingen.de/flowstore/workflows'
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2019-07-03 07:21:16 +00:00
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}
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2018-11-23 15:56:34 +00:00
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params {
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2019-03-12 13:58:41 +00:00
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igenomes_base = '/nfsmounts/igenomes'
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2020-03-06 09:25:08 +00:00
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max_memory = 1999.GB
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max_cpus = 128
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2018-11-23 15:56:34 +00:00
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max_time = 140.h
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}
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