2019-10-10 13:33:06 +00:00
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//Nextflow config file for running on AWS batch
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params {
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2019-11-26 09:43:23 +00:00
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awsqueue = ''
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awsregion = ''
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2019-10-10 13:33:06 +00:00
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config_profile_contact = 'Alexander Peltzer (@apeltzer)'
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2019-11-26 09:43:23 +00:00
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config_profile_description = 'AWSBATCH Cloud Profile'
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config_profile_name = 'AWSBATCH'
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2019-10-10 13:33:06 +00:00
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config_profile_url = 'https://aws.amazon.com/batch/'
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2019-11-26 09:43:23 +00:00
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tracedir = './'
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2019-10-10 13:33:06 +00:00
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}
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aws.region = params.awsregion
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process.executor = 'awsbatch'
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process.queue = params.awsqueue
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2019-11-26 09:43:23 +00:00
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executor.awscli = '/home/ec2-user/miniconda/bin/aws'
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