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11 lines
448 B
Markdown
11 lines
448 B
Markdown
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# nf-core/configs: KRAKEN Configuration
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This profile can be **only** combined with `jenkins.config`. It is used for
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testing pipeline with real data on **in-house** cluster located at SciLifeLab.
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To use, run the pipeline with `-profile kraken`. This will download and launch
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the [`kraken.config`](../conf/kraken.config) which has been pre-configured to
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test the pipeline using `docker` by default.
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Example: `nextflow run -profile kraken,jenkins`
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