2019-09-22 14:45:09 +00:00
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//Profile config names for nf-core/configs
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params {
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config_profile_description = 'CLIP BATCH ENVIRONMENT (CBE) cluster profile provided by nf-core/configs'
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config_profile_contact = 'Patrick Hüther (@phue)'
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config_profile_url = 'http://www.gmi.oeaw.ac.at/'
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}
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process {
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executor = 'slurm'
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2019-12-05 15:06:32 +00:00
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module = 'singularity/3.4.1'
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2019-10-27 19:44:08 +00:00
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queue = { task.memory <= 170.GB ? 'c' : 'm' }
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clusterOptions = { task.time <= 8.h ? '--qos short': task.time <= 48.h ? '--qos medium' : '--qos long' }
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2019-09-22 14:45:09 +00:00
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}
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2019-11-26 13:22:16 +00:00
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singularity {
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enabled = true
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cacheDir = '/scratch-cbe/shared/containers'
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}
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2019-09-22 14:45:09 +00:00
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params {
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2019-10-27 19:44:08 +00:00
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params.max_time = 14.d
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2019-09-22 14:45:09 +00:00
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params.max_cpus = 36
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2019-10-27 19:44:08 +00:00
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params.max_memory = 4.TB
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2019-11-26 13:22:16 +00:00
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igenomes_base = '/resources/references/igenomes'
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}
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