mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-09-21 14:02:05 +00:00
11 lines
448 B
Markdown
11 lines
448 B
Markdown
|
# nf-core/configs: KRAKEN Configuration
|
||
|
|
|
||
|
|
This profile can be **only** combined with `jenkins.config`. It is used for
|
||
|
|
testing pipeline with real data on **in-house** cluster located at SciLifeLab.
|
||
|
|
|
||
|
|
To use, run the pipeline with `-profile kraken`. This will download and launch
|
||
|
|
the [`kraken.config`](../conf/kraken.config) which has been pre-configured to
|
||
|
|
test the pipeline using `docker` by default.
|
||
|
|
|
||
|
|
Example: `nextflow run -profile kraken,jenkins`
|