nf-configs/conf/uppmax.config

//Profile config names for nf-core/configs
params {
  config_profile_description = 'Swedish UPPMAX cluster profile provided by nf-core/configs.'
  config_profile_contact = 'Phil Ewels (@ewels)'
  config_profile_url = 'https://www.uppmax.uu.se/'
}

singularity {
  enabled = true
}

process {
  executor = 'slurm'
  clusterOptions = { "-A $params.project ${params.clusterOptions ?: ''}" }
}

params {
  saveReference = true

  max_memory = 125.GB
  max_cpus = 16
  max_time = 240.h
  // illumina iGenomes reference file paths on UPPMAX
  igenomes_base = '/sw/data/uppnex/igenomes/'
}

def hostname = "hostname".execute().text.trim()

if (hostname ==~ "b.*" || hostname ==~ "s.*") {
  params.max_memory = 109.GB
}

if (hostname ==~ "i.*") {
  params.max_memory = 250.GB
}

if (hostname ==~ "r.*") {
  params.max_cpus = 20
}

profiles {
  devel {
    params {
      config_profile_description = 'Testing & development profile for UPPMAX, provided by nf-core/configs.'
      // Max resources to be requested by a devel job
      max_memory = 120.GB
      max_time = 1.h
    }
    executor.queueSize = 1
    process.queue = 'devel'
  }
}