mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-14 05:33:09 +00:00
29 lines
759 B
Text
29 lines
759 B
Text
|
singularityDir = "/athena/elementolab/scratch/reference/.singularity/singularity_images_nextflow"
|
||
|
|
|
||
|
|
params {
|
||
|
|
config_profile_description = 'Weill Cornell Medicine, Scientific Computing Unit Slurm cluster profile provided by nf-core/configs'
|
||
|
|
config_profile_contact = 'Ashley Stephen Doane, PhD (@DoaneAS)'
|
||
|
|
igenomes_base = '/athena/elementolab/scratch/reference/igenomes'
|
||
|
|
}
|
||
|
|
|
||
|
|
singularity {
|
||
|
|
enabled = true
|
||
|
|
envWhitelist='SINGULARITY_BINDPATH'
|
||
|
|
cacheDir = "/athena/elementolab/scratch/reference/.singularity/singularity_images_nextflow"
|
||
|
|
autoMounts = true
|
||
|
|
}
|
||
|
|
|
||
|
|
process {
|
||
|
|
executor = 'slurm'
|
||
|
|
queue = 'panda_physbio'
|
||
|
|
scratch = true
|
||
|
|
scratch = '/scratchLocal/`whoami`_${SLURM_JOBID}'
|
||
|
|
}
|
||
|
|
|
||
|
|
params {
|
||
|
|
max_memory = 32.GB
|
||
|
|
max_cpus = 8
|
||
|
|
max_time = 24.h
|
||
|
|
}
|
||
|
|
|