nf-configs/docs/azurebatch.md

# nf-core/configs: azurebatch Configuration

To be used with the `azurebatch` profile by specifying the `-profile azurebatch` when running nf-core pipelines.
Custom queue and storage need to be supplied with `params.az_location`, `params.batch_name`, `params.batch_key`, `params.storage_name`, `params.sas_token`.

## Required Parameters

### `--az_location`

The Azure Batch region where the computation is executed in VMs. Default (`westus2`).

### `--batch_name`

The Azure Batch account name.

### `--batch_key`

The Azure Batch account key.

### `--storage_name`

The Azure Blob Storage name.

### `--sas_token`

The Azure Blob Storage shared access signature token.

### `-w`

The Azure Blob container to be used as Nextflow work directory (`-w az://work`).

## Azure Batch Setup

Please refer to the [Nextflow](https://www.nextflow.io/docs/edge/azure.html) documentation which describe how to setup the Azure Batch environment.
Add in minmum config for azure. 2021-11-18 20:51:39 +00:00			`# nf-core/configs: azurebatch Configuration`

			To be used with the `azurebatch` profile by specifying the `-profile azurebatch` when running nf-core pipelines.
Add in sample datastorage for Illumina Platinum genomes. 2021-11-18 21:28:34 +00:00			Custom queue and storage need to be supplied with `params.az_location`, `params.batch_name`, `params.batch_key`, `params.storage_name`, `params.sas_token`.
Add in minmum config for azure. 2021-11-18 20:51:39 +00:00
Fix liniting errors in headers. 2021-11-18 21:49:08 +00:00			`## Required Parameters`
Update Readme with more inforamtion on the options. 2021-11-18 21:47:27 +00:00
Fix liniting errors in headers. 2021-11-18 21:49:08 +00:00			### `--az_location`
Update Readme with more inforamtion on the options. 2021-11-18 21:47:27 +00:00
			The Azure Batch region where the computation is executed in VMs. Default (`westus2`).

Fix liniting errors in headers. 2021-11-18 21:49:08 +00:00			### `--batch_name`
Update Readme with more inforamtion on the options. 2021-11-18 21:47:27 +00:00
			`The Azure Batch account name.`

Fix liniting errors in headers. 2021-11-18 21:49:08 +00:00			### `--batch_key`
Update Readme with more inforamtion on the options. 2021-11-18 21:47:27 +00:00
			`The Azure Batch account key.`

Fix liniting errors in headers. 2021-11-18 21:49:08 +00:00			### `--storage_name`
Update Readme with more inforamtion on the options. 2021-11-18 21:47:27 +00:00
Fix readme to remove blob account. 2021-11-19 00:06:54 +00:00			`The Azure Blob Storage name.`
Update Readme with more inforamtion on the options. 2021-11-18 21:47:27 +00:00
Fix liniting errors in headers. 2021-11-18 21:49:08 +00:00			### `--sas_token`
Update Readme with more inforamtion on the options. 2021-11-18 21:47:27 +00:00
Fix readme to remove blob account. 2021-11-19 00:06:54 +00:00			`The Azure Blob Storage shared access signature token.`
Update Readme with more inforamtion on the options. 2021-11-18 21:47:27 +00:00
Remove work_dir option. 2021-11-18 23:52:24 +00:00			### `-w`
Update Readme with more inforamtion on the options. 2021-11-18 21:47:27 +00:00
Remove work_dir option. 2021-11-18 23:52:24 +00:00			The Azure Blob container to be used as Nextflow work directory (`-w az://work`).
Update Readme with more inforamtion on the options. 2021-11-18 21:47:27 +00:00
Add in minmum config for azure. 2021-11-18 20:51:39 +00:00			`## Azure Batch Setup`

			`Please refer to the [Nextflow](https://www.nextflow.io/docs/edge/azure.html) documentation which describe how to setup the Azure Batch environment.`