nf-configs/conf/imperial.config

//Profile config names for nf-core/configs

params {
  // Config Params
  config_profile_description = 'Imperial College London - HPC Profile -- provided by nf-core/configs.'
  config_profile_contact = 'Combiz Khozoie (c.khozoie@imperial.ac.uk)'
  config_profile_url = 'https://www.imperial.ac.uk/admin-services/ict/self-service/research-support/rcs/'

  // Resources
  max_memory = 256.GB
  max_cpus = 32
  max_time = 72.h
}

executor {
  $pbspro {
    queueSize = 50
  }

  $local {
     cpus = 2
     queueSize = 1
     memory = '32 GB'
   }
}

singularity {
  enabled = true
  autoMounts = true
  runOptions = "-B /rds/,/rdsgpfs/,/rds/general/user/$USER/ephemeral/tmp/:/tmp,/rds/general/user/$USER/ephemeral/tmp/:/var/tmp"
}

process {

  executor = 'pbspro'

}