2021-04-21 15:39:55 +00:00
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params {
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config_profile_description = 'The Wellcome Sanger Institute HPC cluster profile'
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config_profile_contact = 'Anthony Underwood (@aunderwo)'
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config_profile_url = 'https://www.sanger.ac.uk/group/informatics-support-group/'
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}
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singularity {
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enabled = true
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cacheDir = "${baseDir}/singularity"
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runOptions = '--bind /lustre --bind /nfs/pathnfs01 --bind /nfs/pathnfs02 --bind /nfs/pathnfs03 --bind /nfs/pathnfs04 --bind /nfs/pathnfs05 --bind /nfs/pathnfs06 --no-home'
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}
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process{
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executor = 'lsf'
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queue = 'normal'
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errorStrategy = { task.attempt <= 5 ? "retry" : "finish" }
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process.maxRetries = 5
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2021-09-21 13:42:59 +00:00
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withLabel:process_long {
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queue = 'long'
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2021-09-23 10:59:45 +00:00
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max_time = 48.h
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2021-09-21 13:42:59 +00:00
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}
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2021-04-21 15:39:55 +00:00
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}
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executor{
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name = 'lsf'
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perJobMemLimit = true
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poolSize = 4
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submitRateLimit = '5 sec'
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killBatchSize = 50
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}
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2021-04-22 10:59:34 +00:00
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params {
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max_memory = 128.GB
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max_cpus = 64
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max_time = 12.h
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}
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