2022-07-20 12:14:42 +00:00
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// Profile details
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2021-04-21 15:39:55 +00:00
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params {
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config_profile_description = 'The Wellcome Sanger Institute HPC cluster (farm5) profile'
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config_profile_contact = 'Priyanka Surana (@priyanka-surana)'
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config_profile_url = 'https://www.sanger.ac.uk'
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2021-04-21 15:39:55 +00:00
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}
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2022-07-20 12:14:42 +00:00
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// Queue and retry strategy
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2021-04-21 15:39:55 +00:00
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process{
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2022-07-20 12:14:42 +00:00
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executor = 'lsf'
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queue = { task.time < 12.h ? 'normal' : task.time < 48.h ? 'long' : 'basement' }
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errorStrategy = 'retry'
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maxRetries = 5
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}
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2022-07-20 12:14:42 +00:00
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// Executor details
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2021-04-21 15:39:55 +00:00
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executor{
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2022-07-20 12:14:42 +00:00
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name = 'lsf'
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perJobMemLimit = true
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poolSize = 4
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submitRateLimit = '5 sec'
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killBatchSize = 50
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2021-04-21 15:39:55 +00:00
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}
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2021-04-22 10:59:34 +00:00
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2022-07-20 12:14:42 +00:00
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// Max resources
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2021-04-22 10:59:34 +00:00
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params {
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2022-07-20 12:14:42 +00:00
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max_memory = 683.GB
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max_cpus = 256
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max_time = 720.h
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2021-04-22 10:59:34 +00:00
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}
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2022-07-20 12:14:42 +00:00
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// For singularity
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singularity.runOptions = '--bind /lustre --bind /nfs'
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