nf-configs/nfcore_custom.config

/*
 * -------------------------------------------------
 *  nfcore custom profile Nextflow config file
 * -------------------------------------------------
 * Config options for all custom environments.
 * Cluster-specific config options should be saved
 * in the conf folder and imported under a profile
 * name here.
 */

//Please use a new line per include Config section to allow easier linting/parsing. Thank you.
profiles {
  abims        { includeConfig "${params.custom_config_base}/conf/abims.config" }
  adcra        { includeConfig "${params.custom_config_base}/conf/adcra.config" }
  alice        { includeConfig "${params.custom_config_base}/conf/alice.config" }
  aws_tower    { includeConfig "${params.custom_config_base}/conf/aws_tower.config" }
  awsbatch     { includeConfig "${params.custom_config_base}/conf/awsbatch.config" }
  azurebatch   { includeConfig "${params.custom_config_base}/conf/azurebatch.config" }
  bi           { includeConfig "${params.custom_config_base}/conf/bi.config" }
  bigpurple    { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
  binac        { includeConfig "${params.custom_config_base}/conf/binac.config" }
  biohpc_gen   { includeConfig "${params.custom_config_base}/conf/biohpc_gen.config" }
  cambridge    { includeConfig "${params.custom_config_base}/conf/cambridge.config" }
  leicester    { includeConfig "${params.custom_config_base}/conf/leicester.config" }
  cbe          { includeConfig "${params.custom_config_base}/conf/cbe.config" }
  ccga_dx      { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" }
  ccga_med     { includeConfig "${params.custom_config_base}/conf/ccga_med.config" }
  cedars       { includeConfig "${params.custom_config_base}/conf/cedars.config" }
  cfc          { includeConfig "${params.custom_config_base}/conf/cfc.config" }
  cfc_dev      { includeConfig "${params.custom_config_base}/conf/cfc_dev.config" }
  cheaha       { includeConfig "${params.custom_config_base}/conf/cheaha.config" }
  computerome  { includeConfig "${params.custom_config_base}/conf/computerome.config" }
  crick        { includeConfig "${params.custom_config_base}/conf/crick.config" }
  crukmi       { includeConfig "${params.custom_config_base}/conf/crukmi.config" }
  czbiohub_aws { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" }
  denbi_qbic   { includeConfig "${params.custom_config_base}/conf/denbi_qbic.config" }
  ebc          { includeConfig "${params.custom_config_base}/conf/ebc.config" }
  eddie        { includeConfig "${params.custom_config_base}/conf/eddie.config" }
  eva          { includeConfig "${params.custom_config_base}/conf/eva.config" }
  fgcz         { includeConfig "${params.custom_config_base}/conf/fgcz.config" }
  genotoul     { includeConfig "${params.custom_config_base}/conf/genotoul.config" }
  genouest     { includeConfig "${params.custom_config_base}/conf/genouest.config" }
  gis          { includeConfig "${params.custom_config_base}/conf/gis.config" }
  google       { includeConfig "${params.custom_config_base}/conf/google.config" }
  hasta        { includeConfig "${params.custom_config_base}/conf/hasta.config" }
  hebbe        { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
  hki          { includeConfig "${params.custom_config_base}/conf/hki.config"}
  icr_davros   { includeConfig "${params.custom_config_base}/conf/icr_davros.config" }
  ifb_core     { includeConfig "${params.custom_config_base}/conf/ifb_core.config" }
  imperial     { includeConfig "${params.custom_config_base}/conf/imperial.config" }
  jax          { includeConfig "${params.custom_config_base}/conf/jax.config" }
  ku_sund_dangpu {includeConfig "${params.custom_config_base}/conf/ku_sund_dangpu.config"}
  lugh         { includeConfig "${params.custom_config_base}/conf/lugh.config" }
  maestro      { includeConfig "${params.custom_config_base}/conf/maestro.config" }
  marvin       { includeConfig "${params.custom_config_base}/conf/marvin.config" }
  medair       { includeConfig "${params.custom_config_base}/conf/medair.config" }
  mjolnir_globe { includeConfig "${params.custom_config_base}/conf/mjolnir_globe.config" }
  mpcdf        { includeConfig "${params.custom_config_base}/conf/mpcdf.config" }
  munin        { includeConfig "${params.custom_config_base}/conf/munin.config" }
  nihbiowulf   { includeConfig "${params.custom_config_base}/conf/nihbiowulf.config" }
  nu_genomics  { includeConfig "${params.custom_config_base}/conf/nu_genomics.config" }
  oist         { includeConfig "${params.custom_config_base}/conf/oist.config" }
  pasteur      { includeConfig "${params.custom_config_base}/conf/pasteur.config" }
  phoenix      { includeConfig "${params.custom_config_base}/conf/phoenix.config" }
  prince       { includeConfig "${params.custom_config_base}/conf/prince.config" }
  rosalind     { includeConfig "${params.custom_config_base}/conf/rosalind.config" }
  sage         { includeConfig "${params.custom_config_base}/conf/sage.config" }
  sahmri       { includeConfig "${params.custom_config_base}/conf/sahmri.config" }
  sanger       { includeConfig "${params.custom_config_base}/conf/sanger.config"}
  sbc_sharc    { includeConfig "${params.custom_config_base}/conf/sbc_sharc.config"}
  seg_globe    { includeConfig "${params.custom_config_base}/conf/seg_globe.config"}
  tigem        { includeConfig "${params.custom_config_base}/conf/tigem.config"}
  uct_hpc      { includeConfig "${params.custom_config_base}/conf/uct_hpc.config" }
  unibe_ibu    { includeConfig "${params.custom_config_base}/conf/unibe_ibu.config" }
  uppmax       { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
  utd_ganymede { includeConfig "${params.custom_config_base}/conf/utd_ganymede.config" }
  utd_sysbio   { includeConfig "${params.custom_config_base}/conf/utd_sysbio.config" }
  uzh          { includeConfig "${params.custom_config_base}/conf/uzh.config" }
  vai          { includeConfig "${params.custom_config_base}/conf/vai.config" }
  vsc_ugent    { includeConfig "${params.custom_config_base}/conf/vsc_ugent.config" }
}